Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g02004 ATGGATGCAACTCAAGTTGAAAAAATCTACGTTGCAGTTGGCTATGATGTGGTAGATGGATTTCAAACATTGGATTGGGCTCTCAAGAAATGGAATTCTCATCCAAATATTTCTATAATCATTTTACATGTTAATTACAATACTTCCAATGATCATGTTTATACACTTCTTGGAAAACTCCCTGCAAAAGGTGCATGTGAAGAAAAACTAGAACGTATAAGGAAATATGAGCAAAACATAATCAACAATTTGCTTTCCAAGTATATAGCTTTATGTGACAAAGTTCCAGCTGAAACATTTGAGGTTGAGAAATTTGATGAACCAATGCATAATCTCACTATAGACTTGATCCTTGGTCTTGGAATAACCAAATTGGTCATTGGATTTTCATTCATGAGGCCTTCCATGAAATCAAAAGATGTCATGAATGGATTATTCTATGTTCATCAATACAAGCCTGATTTTTGTGAATTGTTCATTATATGTGGAGGCAAACAAGTTTCACCAAGAGTGAACAATGGTGAAATAACCATGGAGGATGATAGTGGAGTCAAGGTTGCTAAAATGAGAGATAAAACAAATTTTATAGATTGGATAGAAAGAGTGTTTTGTGATAAAACTATTGATTCCAATGAAAGAGTTTCTAGCAGATCATCAACTTCCTCAACAAATTTGGAGGCACATCTTGACCAAAATCATCCAATTGATGCATATGTTCAACAACTTAAAAATTCTGATGATAAGAGTGCTGCAGGAAAATTTGAGATCCTCACATATAAACTGAATGAAGCTTATAATACAATTCAAATGAAAAGAAAAGAAGAAAAGGACAATTTGGATCGGCATGCAAAAGCTGAATGGGCTATTTACATATGTAATCGTCAGGAAGAAGAACTTGAATATCTAAAAAGTGAAGAAATGACAAAAAGGGAAGAGCTAAAGAAAGAACTTAATGTAGAAAAAGAACAAATTCAAAAAATTAGAATAAATGTTGAAGAGACCAAACAAAGGCTTAGCTCATTGGTAGAGCAACAACTAGACCTAAAAAATAAGCTTCATGTTTCCACATTGGAAATTTCAGAATTTGAAACAAAACTTGAGAATGTAATGGCTGCAAGGACAAAGATGTTAATGGATATAGAGGAGCTAAGTAAACAAAGGGATGTGTTGAACAAAAGGATCATGTTTTCCAAAGAAAAAGATGACACAAAAATTAGTACTAAGCTTATAGAGAATAGTTTTGGTGTAAGAGAGTTTACAAAGGAAGAAATCGTCTTGGCCACCAACAATTTTTCAGAATTACTTAAGTTGAAATCTGGTGGAGATTGGAGTAATGTTTATAGAGGAAACATTAATCATTCCAATGTTGCAATCAAGATGCTTGATTCTACTCTTGCCTTGTCTCAACAAGATTTCCAAGCTAAGTTGAGGTCTCTTGGTAATATTCGGCATCCTCATCTAGTTGCTGTATTGGGATTCTGCTCTGAGCCCAAATGCTTAGTTTTGGAATACATGCACAATGGAAACTTGGAAGAAAAGTTACTTAGCAAGACCATAAGTTGGCAAGATTGCATAAGGATAGCCATAGAAGTTTGTTCTGGGCTGGGCTTTGTCAACTCATTCCAGCCCAGGCCCATTATTCATTGTCACATTTCTCCATCCAACATTCTTCTAGACAACAATCTTGTTGCAAAAGTGACATTTGAGTTTCATGGTTGCAATAAAGAATGTAATGTTGGGTTAGATGTGAAGGAAATAGGGGTTTTGTTGTTGCATATATTGACTGGAAGAGGAAATTGTGTGACAATTGATTTAGAGGCCTTTTATGATGAGATTGGTGAAGAATGGCCATTGGATGTAGCAAGAGAACTTTTGGACTTAGCAATGAGGTGCATGTCCGATGTAGAAATGAGTATAGGAAGAGTCATGGAAGAACTCAATGAAATCAAAAGAAAGGGTTGTGACTTCAATAAAGTGCCTAACATTTTCCTTTGCCCAATCCAAAAGATGGTAATGAGAAATCCATACATAGCAGCAGATGGATTTTCTTATGAGCTAGAAGCAATAGAAGAATGGTTGCAATCTGGAAATGACATATCACCAAAAAGCTTGAGGCTGAACAATACATTAATTTTCCCTAATCATAACCTCCGTTCCCTAATTCAGTATTGGCATAGAAAGAAATTAGCTAATCAAGTTGTAAAATAA 2208 0.3483 MDATQVEKIYVAVGYDVVDGFQTLDWALKKWNSHPNISIIILHVNYNTSNDHVYTLLGKLPAKGACEEKLERIRKYEQNIINNLLSKYIALCDKVPAETFEVEKFDEPMHNLTIDLILGLGITKLVIGFSFMRPSMKSKDVMNGLFYVHQYKPDFCELFIICGGKQVSPRVNNGEITMEDDSGVKVAKMRDKTNFIDWIERVFCDKTIDSNERVSSRSSTSSTNLEAHLDQNHPIDAYVQQLKNSDDKSAAGKFEILTYKLNEAYNTIQMKRKEEKDNLDRHAKAEWAIYICNRQEEELEYLKSEEMTKREELKKELNVEKEQIQKIRINVEETKQRLSSLVEQQLDLKNKLHVSTLEISEFETKLENVMAARTKMLMDIEELSKQRDVLNKRIMFSKEKDDTKISTKLIENSFGVREFTKEEIVLATNNFSELLKLKSGGDWSNVYRGNINHSNVAIKMLDSTLALSQQDFQAKLRSLGNIRHPHLVAVLGFCSEPKCLVLEYMHNGNLEEKLLSKTISWQDCIRIAIEVCSGLGFVNSFQPRPIIHCHISPSNILLDNNLVAKVTFEFHGCNKECNVGLDVKEIGVLLLHILTGRGNCVTIDLEAFYDEIGEEWPLDVARELLDLAMRCMSDVEMSIGRVMEELNEIKRKGCDFNKVPNIFLCPIQKMVMRNPYIAADGFSYELEAIEEWLQSGNDISPKSLRLNNTLIFPNHNLRSLIQYWHRKKLANQVVK 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g02004 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 732 IPR013083 -
Trre16g02004 735 SUPERFAMILY Protein kinase-like (PK-like) 412 633 IPR011009 -
Trre16g02004 735 ProSiteProfiles Protein kinase domain profile. 432 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g02004 735 SMART Ubox_2 662 724 IPR003613 GO:0004842|GO:0016567
Trre16g02004 735 Pfam U-box domain 659 728 IPR003613 GO:0004842|GO:0016567
Trre16g02004 735 SUPERFAMILY RING/U-box 658 727 - -
Trre16g02004 735 Coils Coil 296 351 - -
Trre16g02004 735 ProSiteProfiles U-box domain profile. 658 731 IPR003613 GO:0004842|GO:0016567
Trre16g02004 735 PANTHER OS02G0152300 PROTEIN 9 722 - -
Trre16g02004 735 Gene3D Transferase(Phosphotransferase) domain 1 505 639 - -
Trre16g02004 735 CDD RING-Ubox_WDSUB1-like 660 714 - -
Trre16g02004 735 Pfam Protein tyrosine and serine/threonine kinase 441 567 IPR001245 GO:0004672|GO:0006468
Trre16g02004 735 Coils Coil 380 400 - -
Trre16g02004 735 Gene3D Phosphorylase Kinase; domain 1 415 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g02004 Trre-Chr16 16035957 16040952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g02004 3 730 U-box Gene Family AT5G65500 41.220 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre16g02004 PK_Tyr_Ser-Thr 7.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g02004 - - gmx:100795815 911.368