Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01995 ATGGCCAACCTTTCTGATGTGATAGAATTGGGTAAGAGTAGTGAAGAGAGGAAAGAAGCACAAGAATTAGAAGATGAAGAAAGTTTCTCATATGCTATACACCTTGCTAACTTTGTTGTGCTACCAATGGCACTTCAATCTGCAGCTGAGCTTGGCGTTTTCGATGTGTTGCAAAAAGCCGGTAAAGGAGCTCAACTGTCGGCCGAAGAGATTGCGGCCCGTCTTTCATGTAACAATCCGGATGCTCCCAAAATGTTAGATCGCATTCTTGCTCTTCTTGCCTCACATGATATATTAAAGTGTTTGGTTTTTCAAGATCAAGAAAAACTTGGATCCTTTCATAGACTTTATAGTATGGCTCCTGTTGCTAAATTCTTTGCTCCTAATTCTGATGGTGTTTCATTGGGACCATTGTTGTCTTTGATTCAAGATAAGGTTTTCTTAGCTAGCTGGTCGGAGCTTAATAATGCAATACGAGAAGGGGGTGTTCCATTCGACAGGGTTCATGGCACACATGCCTTTGAATATCCAAGCTTGGACTCAAGGTTCAACCAAGTTTTCAATAAAGCAATGATCAATCATACCAATATAGTTATGAAGAAAGTTCTTGAGTCTTATAAAGGTTTCAAGGACATAAAAAGGCTTGTGGATGTTGGAGGTGGTCTTGGAGTCAACATTAACTTGATCACAACTAAATATCCTCAAATAGAGGGTATCAATTTCGACTTACCTCATGTCATTCAACATGCCCCTTCATATCCTGGAGTTGAACACGTTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTATCTTTATGAAGTGGATACTCCATGATTGGAGTGATGAACACTGCTTAAAGCTTTTGAAGAATTGTTATGATGCTATTCCAAATGATGGAAAGGTGATTGTTTTAGAGGCACATATTCCTATTGTGCCTGAAAATGGTGATGCTGCAAAGTCTACTTCCCAATTGGATGTTCTGATGATGACTCAAAACCCAGGAGGAAAAGAGCGAACTAAGCAAGAATTTATTGATTTTGCAACTAGAGTTGGATTTAGTGGCATCAGATTTGAATGTTTTGTCCGTAACTTTTGGGTCATGGAGTTCTTTAAGTAA 1125 0.3929 MANLSDVIELGKSSEERKEAQELEDEESFSYAIHLANFVVLPMALQSAAELGVFDVLQKAGKGAQLSAEEIAARLSCNNPDAPKMLDRILALLASHDILKCLVFQDQEKLGSFHRLYSMAPVAKFFAPNSDGVSLGPLLSLIQDKVFLASWSELNNAIREGGVPFDRVHGTHAFEYPSLDSRFNQVFNKAMINHTNIVMKKVLESYKGFKDIKRLVDVGGGLGVNINLITTKYPQIEGINFDLPHVIQHAPSYPGVEHVGGDMFESVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPNDGKVIVLEAHIPIVPENGDAAKSTSQLDVLMMTQNPGGKERTKQEFIDFATRVGFSGIRFECFVRNFWVMEFFK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01995 374 SUPERFAMILY "Winged helix" DNA-binding domain 24 129 IPR036390 -
Trre16g01995 374 PIRSF O-mtase 10 374 IPR016461 GO:0008168
Trre16g01995 374 FunFam Caffeic acid 3-O-methyltransferase 11 126 - -
Trre16g01995 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 372 IPR029063 -
Trre16g01995 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 374 IPR016461 GO:0008168
Trre16g01995 374 PANTHER O-METHYLTRANSFERASE 36 355 IPR016461 GO:0008168
Trre16g01995 374 FunFam Caffeic acid O-methyltransferase 127 374 - -
Trre16g01995 374 Gene3D Vaccinia Virus protein VP39 128 374 IPR029063 -
Trre16g01995 374 Gene3D - 10 126 IPR036388 -
Trre16g01995 374 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Trre16g01995 374 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01995 Trre-Chr16 15951228 15956341 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01995 10 374 Monolignol Biosynthesis Gene Families AT5G54160 49.591 2.65e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01995 K13066 - gmx:100803633 562.377