Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01994 ATGGCCAACCTTTCTGATGTGATAAAATTGGGTAAAAGTAGTGAAGAGAGGAGAGAAGAACAAGAACTTGATGATGAAGAAAGTTTCTCATATGCTATACACCTTGCCAACTCTATTGTGCTACCAATGGCACTTCAATCTGCTACTGAGCTTGGCGTTTTTGATGTGTTGCAAAAAGCCGGTAAAGGTGCTCAATTGTCGGCCGAAGAGATTGCGGACCGTCTTTCATGTAACAATCCGGATGCTCCCAAAATGTTAGATCGCATTCTTGCTCTTCTTGCCTCACATGATATATTGAAGTGTTTGGTTTTTCAAGATCAAGAAAAACTTGGATCCTTTCATAGACTTTATAGTATGACTCCTGTTGCAAAATTCTTTTCTCCTAATTCGGATGGTGTTTCATTAGGACCATTGTTGTCTTTGACTCAAGACAAGGTTTTCTTAGCTAGCTGGTCCGAGCTTAATAATGCAATACGAGAAGGGGGTGTTCCATTCGACAGGGTTCATGGCACACATGCCTTTGAATATCCAAGCTTGGACTCTAGGTTCAACCAAGTTTTCAATAAAGCTATGATCAATCTTACCAAAATAGTTATGAAGAATGTGCTAGAGTCTTATAAAGGTTTCAAGGACATAAAAAGGCTTGTGGATGTTGGAGGTGGTCTTGGGGTCAACATTAACTTGATCACAACTAAATATCCTCAAATAAAGGGTATCAATTTCGACTTACCTCATGTCATTCAAAGTGCCCCTTCATATCCTGGAGTTGAACACGTTGGTGGAGATATGTTTGAAAGTGTGCCTAAAGGAGATGCTATCTTTATGAAGTGCATGCTTCATGGTTGGAGTGATGAGCAATGCTTAAAGCTTTTGAAAAATTGTTATGATGCTATCCCAAATGATGGTAAGGTGATTGTTTTAGAAGCACTTATTCCTATTGTGCCTGAGAATAGTGATACTGCAAAGTATACTTCCGAATTGGATGTTTTGATGATGACTCAAAGCCCAGGAGGAAAAGAGCGAACTAAGCAAGAATTCATTGATTTGGCAACTCGAGTTGGATTTAGTGGCATCAGATTTGAATGTTTTGTTTGTAACATCTCGGTTATGGAGTTCTTTAAGTAG 1125 0.3911 MANLSDVIKLGKSSEERREEQELDDEESFSYAIHLANSIVLPMALQSATELGVFDVLQKAGKGAQLSAEEIADRLSCNNPDAPKMLDRILALLASHDILKCLVFQDQEKLGSFHRLYSMTPVAKFFSPNSDGVSLGPLLSLTQDKVFLASWSELNNAIREGGVPFDRVHGTHAFEYPSLDSRFNQVFNKAMINLTKIVMKNVLESYKGFKDIKRLVDVGGGLGVNINLITTKYPQIKGINFDLPHVIQSAPSYPGVEHVGGDMFESVPKGDAIFMKCMLHGWSDEQCLKLLKNCYDAIPNDGKVIVLEALIPIVPENSDTAKYTSELDVLMMTQSPGGKERTKQEFIDLATRVGFSGIRFECFVCNISVMEFFK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01994 374 Gene3D - 10 126 IPR036388 -
Trre16g01994 374 FunFam Caffeic acid O-methyltransferase 127 374 - -
Trre16g01994 374 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Trre16g01994 374 SUPERFAMILY "Winged helix" DNA-binding domain 24 129 IPR036390 -
Trre16g01994 374 FunFam Caffeic acid 3-O-methyltransferase 11 126 - -
Trre16g01994 374 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
Trre16g01994 374 PIRSF O-mtase 10 374 IPR016461 GO:0008168
Trre16g01994 374 Gene3D Vaccinia Virus protein VP39 128 374 IPR029063 -
Trre16g01994 374 PANTHER O-METHYLTRANSFERASE 35 360 IPR016461 GO:0008168
Trre16g01994 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 132 372 IPR029063 -
Trre16g01994 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 374 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01994 Trre-Chr16 15945861 15948179 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01994 10 374 Monolignol Biosynthesis Gene Families AT5G54160 48.501 4.80e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01994 K13066 - gmx:100803633 529.635