Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01992 ATGGCTTCCAGCAATATTTTCTTGCTGCACCACGCATGCTTTGCTGATGCTCAGTCTTCACAGGATGCTGGTCAAGAGAAGAACAACTTCCTCGATGATGCTCAGTGTCCTATTGGAAGACGCCCTAGGTGTTTTGCTCAAGAATTCGGTGATCAGATCGATTCACATGTGATACTTCGGGACCCTAACCACAATGAATTTGAGATTCATGTCACCAGAAAGTCTAAGGAGTTATATTTTGATGATGGCTGCTTTTCAAAGAAAGTGACATTTTATGACATGTATTCTGGAACTTTGATTTTGCCTTGGGTGATAGAGTCAGGTGAGGTGTACGAAGTAGCAGCCAAGCTTGCGGTGAAAGCTGCCACGGAAGGTGTCAATGCTGATGCACCTGAGTCACGTGGTTTAGAGAATTCGATTGCAAATTTAGCAGACTCTCTTTCTTCACAACCCGATTCAACCGCGCCAGCACCAGTTGAAGTGCCAGGTGACAGATCAGATGCAACTTTATGGAATGAGCGTGAACTGAAACGTGAGAGAAGGAAACAATCAAATCGTGAATCTGCTAGGAGGTCAAGACTAAGGAAGCAGGGTGAGGCTGAAGAATTCGCACGAAAAGTTGAATCCTTGAATGCTGAGAGTGCATTACTTAAATCAGAAGTAAATCAACTTGCTGAGAGTTCTGAAAAACTGAGGATGGAAAATGCTGCATTGAAGGCACGATGCATTGTTATGAAGCTTAATCAGGTGCTTCTATTAAGGAGGGTGGTCCTAGAGAACCATGGCATTCATTTCAGAGCCTCTCTCTCTTTCTCTGGCCGCCGCTCTCTCTCTCGAAATTTTGAGCAAAGGTTAAAAGTGAAAGAGGTGGAGTTATTGTGTTTTGTTGTTAATGTTACTTCTAGACTAGATGAACAACAAGGAACACAAAGAACAGGGAACACCTCTGTTGATGTTGTCAATGTTGGCGGTGTTAGGAGAATAGAGATGGGTTTGTTAAGCCATGTGGTTGGAACGAATTCTACAGACCAAGAGGAAGAACATGTTCAGAAACAGTTTCAAAACAAGGAGAGGTTAATCATGACAACTGCAACAATGACTGCTCTATTGTACTACACATTGAATAAGAAATTGCAGACTCAAACCACAATTGATGAAGATGGTGATGAAAGTGGTTACTTCTGTTTTGTGGAAAGAAAATGTGCTCAGCTTGGAACAAGCTCTGTTTCCAGTCAGTTAAAGAGGAATGGGAGAATGGAGATTAAAGCCTTGGAAAGGTTGTAG 1284 0.4252 MASSNIFLLHHACFADAQSSQDAGQEKNNFLDDAQCPIGRRPRCFAQEFGDQIDSHVILRDPNHNEFEIHVTRKSKELYFDDGCFSKKVTFYDMYSGTLILPWVIESGEVYEVAAKLAVKAATEGVNADAPESRGLENSIANLADSLSSQPDSTAPAPVEVPGDRSDATLWNERELKRERRKQSNRESARRSRLRKQGEAEEFARKVESLNAESALLKSEVNQLAESSEKLRMENAALKARCIVMKLNQVLLLRRVVLENHGIHFRASLSFSGRRSLSRNFEQRLKVKEVELLCFVVNVTSRLDEQQGTQRTGNTSVDVVNVGGVRRIEMGLLSHVVGTNSTDQEEEHVQKQFQNKERLIMTTATMTALLYYTLNKKLQTQTTIDEDGDESGYFCFVERKCAQLGTSSVSSQLKRNGRMEIKALERL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01992 427 MobiDBLite consensus disorder prediction 146 197 - -
Trre16g01992 427 Coils Coil 200 241 - -
Trre16g01992 427 Coils Coil 414 427 - -
Trre16g01992 427 SMART brlzneu 173 237 IPR004827 GO:0003700|GO:0006355
Trre16g01992 427 CDD bZIP_plant_GBF1 178 226 IPR045314 GO:0003700|GO:0006355
Trre16g01992 427 Gene3D - 176 246 - -
Trre16g01992 427 Pfam bZIP transcription factor 173 235 IPR004827 GO:0003700|GO:0006355
Trre16g01992 427 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Trre16g01992 427 MobiDBLite consensus disorder prediction 167 197 - -
Trre16g01992 427 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 238 IPR004827 GO:0003700|GO:0006355
Trre16g01992 427 PANTHER G-BOX-BINDING FACTOR 3-RELATED 147 253 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre16g01992 427 SUPERFAMILY Leucine zipper domain 176 232 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01992 Trre-Chr16 15906502 15914135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01992 172 242 bZIP Transcription Factor Family AT2G46270 72.603 9.27e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre16g01992 bZIP_1 2.6e-16 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01992 K09060 - gmx:100781875 117.087