Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01989 ATGGCCAACCTTTCTGATGTGATAGAATTGGGTAAAAGTAGTGAAGAGAGGAGAGAAGAACAAGAACTAGAAGATGAAGAAAGTTTCTCATATGCTATACACCTTGCCAACTCTATTGTGCTACCAATGGCACTTCAATCTCCTATTGAGCTTGGCGTTTTCGATGTGTTGCAAAAAGCCGGTAAAGGTACTCAGTTGTCGGCCAAAGAGATTGCTGCCCGTCTTTCATGTAGCAATCTGAATGCTCCCAAAATGTTGGATCGCATTCTTGCTCTTCTTGCCTCATATGATATATTGAAGTGTTTGGTTTTGCAAGATCAACAAAAACTTGGATCGTTTCATAGAGTTTATAGTATGACTCCTGTTGCTAAATTCTTTGCCCCTAATTCTGATGGTGTTTCATATCGATAA 411 0.3966 MANLSDVIELGKSSEERREEQELEDEESFSYAIHLANSIVLPMALQSPIELGVFDVLQKAGKGTQLSAKEIAARLSCSNLNAPKMLDRILALLASYDILKCLVLQDQQKLGSFHRVYSMTPVAKFFAPNSDGVSYR 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01989 136 Pfam Dimerisation domain 43 94 IPR012967 GO:0046983
Trre16g01989 136 FunFam Caffeic acid 3-O-methyltransferase 11 126 - -
Trre16g01989 136 Gene3D - 10 126 IPR036388 -
Trre16g01989 136 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 33 136 IPR016461 GO:0008168
Trre16g01989 136 SUPERFAMILY "Winged helix" DNA-binding domain 24 129 IPR036390 -
Trre16g01989 136 PANTHER O-METHYLTRANSFERASE 35 129 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01989 Trre-Chr16 15889704 15890114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01989 10 134 Monolignol Biosynthesis Gene Families AT5G54160 39.370 5.06e-23 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01989 K13066 - tpra:123922925 179.104