Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01980 ATGGCTGAGCAACGAAACCGTTGGAGCTGGGACGTTACCGGTTTCGAACCATGGAAGTCGTCCTCGCCGCAGAAGCCGCCGTCGCCGTCAGAGCACGACGATCGGAAACCTAATGCGCCGTTAGTAAGGAGATACTCTATTTCGACTTCATCGGTTCTTCCGCAGCATAAAATCACTACAGCTGCTAAGCTTCAACGGTTAAAGGATAAAGTTAAGCTTGCTAGAGCTGACTATTTGCAGTTAAGACAAGAAGCAAGTGAGCTTCAAGAATATTCAAATGCAAAACTTGATAGAGTTACACGATATCTTGGTGTTCTTGCTGAGAAAACCCGCAAGTTAGATCAAGTTGCCCTTGAAACTGAAGCAAGAATATCACCACTGATCAATGAGAAAAAGAGATTGTTCAATGATTTATTGACATCTAAAGGAAGCATACGCATATTCTGTAGGACAAGGCCGTTATTTGAAGATGAAGGTCCTTCAGTTGTTGATTTTCCAGATGATCACACCATTCGTGTAAATACTGGTGATGAAACCTTCGCTAACCCCAAAAAAGATTATGAATTTGATAAAGTTTATGGTCCTCATGTTGGACAAGCTGAGTTATTCAGTGATGTTCAACCACTGGTGCAGTCAGCTTTGGATGGATATAATGTTTCCATATTTGCCTATGGTCAAACCAATTCCGGAAAAACACACACTATGGAAGGATCGAGCTATGATCGGGGTTTATATGCTCGGTGTTTTGAAGAGTTGTTTGATTTAGCCAATTTGGATACAACCTCCACTTCTCAATATAAATTTTGTGTTACAGTTTGTGAACTTTATAATGAACAGACTAGGGATCTACTTTTGGAGTCAGGGAAAAACATGCCAAAACTCTGCTTTGGATCGGCTGAATGTTCTGTAGAACTGGTGCAGGAAAACGTCAATAACCCTTTGGAATTCTCTACAATTTTAAAAACTGCTTTCCAGAATCGGGGAAATGATGTATTAAAGATCAACGTATCTCATTTGATTGTCACAATACACATATTTTATAACAACTCGATCACTGGTGAGAACTCATATAGCAAACTTTATCTGGTTGACTTGGCTGGAAGTGAAGGTTCAATAACAGAAGACGATAGTGGTGAGCGTGTCACAGATTTGCTGCATGTTATGAAGTCACTTTCGGCGTTGGGAGATGTTTTGTTTTCTTTAACATCGAAGAAGGATATTGTTCCTTATGAAAATTCAATGCTAACAAAACTTCTAGCAGATTCGCTTGGTGGGAGTTCAAAAACTCTGACGATTGTGAATGTCTGTCCAAGTGTTTCAAATTTATCAGAAACATTGATGTCTCTCAATTTCTCTGCTAGAGCTCGAAATTCTGTCTTAAGTCTTGGAAACCGAGATACAATAAAGAAATGGAAAGATGTTGCCAACGATGCCCGTAAGGAGTTGCATGAGAAGGAAAAAGAAATTCACGATCTGAAGCAAGAGGGTTTGGGACTCAAGCAAGCGCTTAAAGATGCTAATGATCAGTGTGTTTTACTCTTCAATGAAGTGCAAAAGGCATGGAAAGTTTCCTCTGCATTGCAGACCGATTTAAAGTCAGAGCATATTTTGCTATCAGATAAGTATAAGATTGAGAAAGAAGAAAGTACTCAGCTTAGAAATCAAGTTGCTCAGCTATTACAGTTAGAACAAGATCAAAAATTGCAGATACAACAGCAAGATTCAACCATCCAAAGTTTGCAGGTTAAAATCAGAACCCTTGAAACTGAGCTCAGCGAAGCACTTGGATCCAGCAAAAGTAGTTCAACGTTTGTTTCAGAGCCAGAGTCTGCAGCTCTATCTGATTCCAGAACAACTGGAGATGGCACTGTGGTAACCAAAAAATTAGAAGAGGAACTCAAGAAACGTGATGCTCTGATTGAGAGGTTGCATGAAGAAAATGAGAAATTGTTTGATAGATTGACTGAGAAGAAAGCATCTGTGGCTGGGTCACCTATGCCATCAAGTCCATTATCTCGTGAATCAGTAAATATTCAGCCTCAGAGTACGACAAGGAATGGTACTAGCAACAACAAAGTAGCAAATTCTACTCATGCTCCTTCTTCACCTTTGACTGCTGCTGCTAAGAATGATGGAACAGTTGCTTTGGTTAAATCTGGCTCTGAAATAGTCAAGACTACCCCTGCGGGTGACTATCTTACTACTGCCCTGAATGACTTTGACCCAGATCAATATGAAGGTCATGCTGCCATTTCTGACGGTGCAAACAAGCTTTTGATGCTGGTTCTGGCTGCTGTCATCAAAGCTGGTGCCTCTAGAGAACATGAGATACTTGCTGAAATCAGGGACGCTGTTTTCTCTTTTATTAGGAAAATGGAGCCAAAGCGAGTAATGGACACCATGCTTGTTTCACGTGTTAGAATTCTGTATATAAGATCTTTACTTGCAAGGTCCCCAGAATTGCAATCAATTAAGGTCTTGCCCGTCGAGTGCTTTCTTGAGAAGGCTAATGCAGGCCGCAGTAGAAGTTCCAGCCGAGGGAATAGTCCCGGAAGGTCTCCTGTACAATATGTTGATGAGCAGATCCAGGGATTTAAAGTGAATTTAAAGCCAGAAAAGAAGTCCAAATTTTCATCTGTTGTATTGAAGATTCGTGGGATTGATCAGGAAATCTGGAGACAGCAGGTGACTGGCGGGAAGCTTAGAGAAATTACCGAGGAAGCTAAAAGTTTTGCAATAGGTAACAAGGCTCTTGCTGCACTCTTTGTACATACTCCGGCAGGTGAGCTGCAGCGCCAAATTAGATCGTGGCTTGCAGAGAGCTTTGACTTTCTATCTGTTTCTGGAAATGATGCATCTGGGGGGTCAACTGGTCAGTTGGAACTTCTTTCAACAGCAATTATGGATGGTTGGATGGCTGGACTTGGTGCTGCTCTGCCTCCACACACTGATGCCCTTGGCCAGCTATTATTTGAATATTCAAAACGTGTATATACTTCTCAGCTACAGCACTTAAAGGATATTGCTGGTACCTTGGCAACAGAAGAGGCTGAAGATGCAGCACAAGTATCCAAGTTGCGTTCAGCTCTAGAATCTGTTGATCATAAAAGAAGGAAGATTCTGCAACAAATGAGAAGTGATGTAGCTTTATTGACATTGGAAAATGGGGGATCGCCTATCTCAAATCCTTCTACTGCAGCTGAAGATGCACGATTAGCATCTCTCATTTCACTTGATGGAATATTAAAGCAGATCAAGGATATAACAAGGCAATCCTCGGTGAACATCTTAAGAAAAAGTAAGAAAAGAGCATTGCTTGAATCTCTTGATGAACTAAAAGAACAGATGCCTTCACTTCTTGAAATTGATCATCCATGTGCTCAGAGCCAAATTTCCGATGCTTGCAGCATAGTTGAGTCAATTCCTGAAGAAGATGACCGCATTCAAGATCTATCTCATGGTCGCAAGCCATCAACAGATCTCGGCACCGGATCTGAAATTGACGTTGCACAATGGAATGTACTCCAATTTAACACAGGCACTGCCACACCTTTTATAATAAAATGTGGAGCAAACTCAAATTCAGAACTAGTCATTAAAGCTGAAGCTAGAGTTCAAGAACCTAAAGGTGGTGAAATTGTGAGGGTTGCCCCGAGGCCCTCTGTTTTGGAAAACGTGAGCTTGGACGAAATGAAACAAATATTTTCTGAACTACCTGAGGCTCTAAGCTTGCTTGCCCTAGCAAGGACTGCAGATGGCACTCGAGCACGGTATTCTAGATTATATAGAACCTTGGCTTCTAAGGTTCCATCTCTTAGAGATTTGGTCAATGAACTCGAAAAAGGGGGTGCACTAAAAGATGTGAGAACATGA 3873 0.4134 MAEQRNRWSWDVTGFEPWKSSSPQKPPSPSEHDDRKPNAPLVRRYSISTSSVLPQHKITTAAKLQRLKDKVKLARADYLQLRQEASELQEYSNAKLDRVTRYLGVLAEKTRKLDQVALETEARISPLINEKKRLFNDLLTSKGSIRIFCRTRPLFEDEGPSVVDFPDDHTIRVNTGDETFANPKKDYEFDKVYGPHVGQAELFSDVQPLVQSALDGYNVSIFAYGQTNSGKTHTMEGSSYDRGLYARCFEELFDLANLDTTSTSQYKFCVTVCELYNEQTRDLLLESGKNMPKLCFGSAECSVELVQENVNNPLEFSTILKTAFQNRGNDVLKINVSHLIVTIHIFYNNSITGENSYSKLYLVDLAGSEGSITEDDSGERVTDLLHVMKSLSALGDVLFSLTSKKDIVPYENSMLTKLLADSLGGSSKTLTIVNVCPSVSNLSETLMSLNFSARARNSVLSLGNRDTIKKWKDVANDARKELHEKEKEIHDLKQEGLGLKQALKDANDQCVLLFNEVQKAWKVSSALQTDLKSEHILLSDKYKIEKEESTQLRNQVAQLLQLEQDQKLQIQQQDSTIQSLQVKIRTLETELSEALGSSKSSSTFVSEPESAALSDSRTTGDGTVVTKKLEEELKKRDALIERLHEENEKLFDRLTEKKASVAGSPMPSSPLSRESVNIQPQSTTRNGTSNNKVANSTHAPSSPLTAAAKNDGTVALVKSGSEIVKTTPAGDYLTTALNDFDPDQYEGHAAISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFSFIRKMEPKRVMDTMLVSRVRILYIRSLLARSPELQSIKVLPVECFLEKANAGRSRSSSRGNSPGRSPVQYVDEQIQGFKVNLKPEKKSKFSSVVLKIRGIDQEIWRQQVTGGKLREITEEAKSFAIGNKALAALFVHTPAGELQRQIRSWLAESFDFLSVSGNDASGGSTGQLELLSTAIMDGWMAGLGAALPPHTDALGQLLFEYSKRVYTSQLQHLKDIAGTLATEEAEDAAQVSKLRSALESVDHKRRKILQQMRSDVALLTLENGGSPISNPSTAAEDARLASLISLDGILKQIKDITRQSSVNILRKSKKRALLESLDELKEQMPSLLEIDHPCAQSQISDACSIVESIPEEDDRIQDLSHGRKPSTDLGTGSEIDVAQWNVLQFNTGTATPFIIKCGANSNSELVIKAEARVQEPKGGEIVRVAPRPSVLENVSLDEMKQIFSELPEALSLLALARTADGTRARYSRLYRTLASKVPSLRDLVNELEKGGALKDVRT 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01980 1290 PRINTS Kinesin heavy chain signature 216 237 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g01980 1290 PRINTS Kinesin heavy chain signature 408 429 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g01980 1290 PRINTS Kinesin heavy chain signature 359 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g01980 1290 SMART kinesin_4 142 466 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g01980 1290 Pfam Kinesin motor domain 153 457 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g01980 1290 MobiDBLite consensus disorder prediction 597 621 - -
Trre16g01980 1290 ProSitePatterns Kinesin motor domain signature. 358 369 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre16g01980 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 118 457 IPR027417 -
Trre16g01980 1290 FunFam kinesin-like protein KIN-14B isoform X1 91 459 - -
Trre16g01980 1290 MobiDBLite consensus disorder prediction 1 39 - -
Trre16g01980 1290 Coils Coil 468 509 - -
Trre16g01980 1290 Coils Coil 64 84 - -
Trre16g01980 1290 PANTHER KINESIN-LIKE PROTEIN KLP-3 55 658 IPR027640 GO:0003777|GO:0007018
Trre16g01980 1290 ProSiteProfiles Kinesin motor domain profile. 144 458 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g01980 1290 MobiDBLite consensus disorder prediction 657 707 - -
Trre16g01980 1290 Coils Coil 542 562 - -
Trre16g01980 1290 MobiDBLite consensus disorder prediction 665 707 - -
Trre16g01980 1290 Coils Coil 626 660 - -
Trre16g01980 1290 Coils Coil 570 597 - -
Trre16g01980 1290 Gene3D Kinesin motor domain 89 458 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01980 Trre-Chr16 15838345 15851925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01980 131 459 Calmodulin-binding Proteins AT5G65930 36.657 1.42e-48 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01980 - - mtr:25502890 2253.79