Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01978 ATGGAGACACACGGCGACTTACCCTTTCACTCCTCTCTCAGTCCAGGCATCGCTTTGCTCTCGCACAAAATGTTTCCGACATGCCGCACGTTCATTGAACGTCATCCAAAATTTGATTCCAACATTGTTGCTCAACTTGATCACATGCAAGCCATTGTTGATGTCCTCGAATCTGCATCTCTCCGATTGGGTCCCACCAAAACTCATCCAGACCACTATTCTGTACTCCAAGTCAAATCATGTGAAGCTGCAGCAAACCGCGACTTTGTCCGACAGCAGTTCAAGAAGCTGGTTCGTTTATTGGACCCAAACAAGAATAAGTTCCCTTTTGCTGATGAAGCTCTCATGAGAGTTCGCGAAGCCTGGTATGTTCTCTCTGATCCCATTAGATTAGACCAATTTGAACGTGAAATTCGTGGAGAAGGAAATGGTTTTTCATCTGCTTCATTTTGGACTATGTGTCCTTATTGCTGGTATTTACACGAGTATGAGAGAAAGTACGAAGATTGTACACTTCGGTGTGAAAATTGTAAGAGGACTTTTCATGGAACTGCTGTGAATCCGCCGGATCCAGAATCAATGGTGGAGGGGAAGGAACAATATTATTGCTATCACATGAGTTTGCCCTTAAGGTACCCTGCTGAAAACATGTCTCAGTTTGAACTTGGTGGAAATGGAGGAAAGAGAATGAGGATTAAAACTGTGGCTAACAGAGTTAGGGTTAAAGGGTTTGTTCTGGATAGCGACTCAGAGCCTGAAATGGAAGTTGAAATATGA 777 0.4363 METHGDLPFHSSLSPGIALLSHKMFPTCRTFIERHPKFDSNIVAQLDHMQAIVDVLESASLRLGPTKTHPDHYSVLQVKSCEAAANRDFVRQQFKKLVRLLDPNKNKFPFADEALMRVREAWYVLSDPIRLDQFEREIRGEGNGFSSASFWTMCPYCWYLHEYERKYEDCTLRCENCKRTFHGTAVNPPDPESMVEGKEQYYCYHMSLPLRYPAENMSQFELGGNGGKRMRIKTVANRVRVKGFVLDSDSEPEMEVEI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01978 258 SUPERFAMILY Chaperone J-domain 66 136 IPR036869 -
Trre16g01978 258 Coils Coil 160 180 - -
Trre16g01978 258 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 18 219 - -
Trre16g01978 258 SMART dnaj_3 70 130 IPR001623 -
Trre16g01978 258 ProSiteProfiles dnaJ domain profile. 71 146 IPR001623 -
Trre16g01978 258 Pfam DnaJ domain 71 130 IPR001623 -
Trre16g01978 258 CDD DnaJ 71 127 IPR001623 -
Trre16g01978 258 Gene3D DnaJ domain 65 147 IPR036869 -
Trre16g01978 258 SUPERFAMILY FYVE/PHD zinc finger 149 204 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01978 Trre-Chr16 15831012 15831788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01978 47 244 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.178 4.41e-37 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01978 - - psat:127074958 365.155