Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01963 ATGTTGTTTTCAATTCCATTTTTGGTTTTCTTTTCCAGTCTTTGCTTAATAACAGGGAAAATGGAAAAGAATGAAGAGATGGTGATGAGTACTAAAGCTGAAACAGTGACGATTAACTCATCACAAGTGAAAATATCAACCCAAATTGAGAAATCTCATATGCATGTTCAAAACAATAGTTTCAAGTCAAATTTCAAGGAATGTTTAAAAAACCATGCTGCTAGCATTGGTGGTTATTCTATTGATGGGTGCTGTGAATTTTTACCCGGTGGCAATGAAGGTACAACAGAGTTTTTAAAATGTGCTGCTTGCAGTTGCCATCGTAATTTTCATCGTAAAGAAACAGTTGTTGTTTCCGAAGATGTGGTGCCTTTTTCGTTCAATAAATCATGCCACCCTCTGGCTCCAGCTCCAGCTCCAGCTCCGACTCCTTACACAGCGTATTCGAGGAGGGGTGGTGAAGAAAATGTTCATGTTTTTGAGCATATCGCCCAAGGTGGTGGAGAAGGTTCATCGAATTCGAAGAAAAGGTTCAGGACGAAGTTCACTACTGAACAAAAGGAAAAGATGATGGATTTTGCAACAACATTGGGTTGGAAGATCCAAAAGAAGGATGGGAACATTGTTGAAGATTTTTGCAAGCAAATTGGGGTGCAGCGTCATGTATTTAATGTTTGGATACATAACAACAAGTATACCCTAGGTAAAATGCCCTAG 717 0.3905 MLFSIPFLVFFSSLCLITGKMEKNEEMVMSTKAETVTINSSQVKISTQIEKSHMHVQNNSFKSNFKECLKNHAASIGGYSIDGCCEFLPGGNEGTTEFLKCAACSCHRNFHRKETVVVSEDVVPFSFNKSCHPLAPAPAPAPTPYTAYSRRGGEENVHVFEHIAQGGGEGSSNSKKRFRTKFTTEQKEKMMDFATTLGWKIQKKDGNIVEDFCKQIGVQRHVFNVWIHNNKYTLGKMP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01963 238 Pfam ZF-HD protein dimerisation region 64 115 IPR006456 -
Trre16g01963 238 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 114 IPR006456 -
Trre16g01963 238 FunFam Zinc-finger homeodomain protein 2 164 236 - -
Trre16g01963 238 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 114 IPR006456 -
Trre16g01963 238 Gene3D - 162 235 - -
Trre16g01963 238 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 233 - -
Trre16g01963 238 SUPERFAMILY Homeodomain-like 166 236 IPR009057 -
Trre16g01963 238 NCBIfam homeobox domain, ZF-HD class 175 232 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01963 Trre-Chr16 15730815 15731531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01963 62 234 ZF-HD Transcription Factor Family AT4G24660 46.703 4.63e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre16g01963 ZF-HD_dimer 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01963 - - mtr:11410439 223.787