Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01942 ATGGCTAAATTCTTGTGGTTTTCATGGTTTCTAATATATTTCCTTTTGGTGGTACAGATGCATATTGTAACAAGCCAGTCAAACCCAAAATCGACTGGAGAGATTAAGTTGAGGGTCGGGGTCCCTATGAAAGACGGTTTTTCCCAATTTGTGAAAGTGGTTTGGAATTCTCCTGAAAACAAGTATAATGTCTCTGGATATTGCATGGATATTTTCAATGCAGTTGTAAACAACATAACAGCTTTCAAGGTCTCTCTACAATTTGAACCTTATGTTAATGAATCAAAACACAGTGCAGGAACATATGATGAACTTATCCAACAGGTCCCAACAAAGTATGATGTTGTGGTTGGAGACATAACAATTGTGGCAAATCGTTCAACAAGTGTAGATTTTACACTGCCATATACAGAATCAGGAGTTAGAATGTTAGTTCCACTTCAACATGGGAGACACAAAACCATGTGGATTTTTGCGAAACCCTTTAGTTGGGATCTTTGGTTGAGTATAGTCATAATCTCCATGTTCATAGGGTTTGTGATACTCATCATGGAAAGAAATGTACATACTCTTCCTAATCATCAAGAGGAGCGTTCACCATTTAAAAAACAGCTCAGTGCGATAACTATTCTGTGGTTTCCGATATCACAGGCAGTTCTTCCCGAAAGACAAGTGGTTGCAAAGAATTGTTCGAGATTTGTTTTGATGGTTTGGCTTCTATTGGCGTTTGTACTTATGCAAAGCTACACAGCAAACTTGACCTCTATATTGACCTTAGATCATATGCAACCTAGTTTTCTCAATGTAAATGATCTAAGGAAAGGGGGACATTATATTGGATACCAAGACGGTTCTTTTGTTTATGATTTGTTGGTACAACAATTGAAGTTTAATCCATTGAAATTGAAGGCATATGGCAACATTTCTAGCTATTACCATGCTTTAAAACTTGGAAGCCAACGTGGGGGTGTCACAGCTATATTTGATGAAGTGCCCTATCTTAATGTCTACCTTCAAAAGTTTAAATCCAATTACATCATAGCTGGTCCAACATATCAAACCGATGGATTTGGTTTTGCATTCCCTTTAAATTCAAATCTTACTGCTCACTTCTCAAGAGCCATATTGAGTGTGACTGAAAATCATGAATTTATGGAAAAGATTGAGAAAAAATATTTTGGGAAAAGTATTGAAGTACTACAACAACAGTCTGTGCAAATATCTTCAGCTTCACCAAGTCTTACCTTTCACAGCTTTGCAGGGTTATTCTTAATCACAGGCATTTCTACCTTAATGGCATTATTTGTTTCTGAAACTCTTATTTTTTGGCAAAATTCCATTTCAATGGTTAAAGAATATAGTCAGAGATGGTTCTTACACTCACCACCTTCCACTGAAAAATCTAATGATCTTCAATCAACAGAAGGAACCAATCGACCAAGCCTCCCTTGCGACTTATGA 1461 0.3682 MAKFLWFSWFLIYFLLVVQMHIVTSQSNPKSTGEIKLRVGVPMKDGFSQFVKVVWNSPENKYNVSGYCMDIFNAVVNNITAFKVSLQFEPYVNESKHSAGTYDELIQQVPTKYDVVVGDITIVANRSTSVDFTLPYTESGVRMLVPLQHGRHKTMWIFAKPFSWDLWLSIVIISMFIGFVILIMERNVHTLPNHQEERSPFKKQLSAITILWFPISQAVLPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDHMQPSFLNVNDLRKGGHYIGYQDGSFVYDLLVQQLKFNPLKLKAYGNISSYYHALKLGSQRGGVTAIFDEVPYLNVYLQKFKSNYIIAGPTYQTDGFGFAFPLNSNLTAHFSRAILSVTENHEFMEKIEKKYFGKSIEVLQQQSVQISSASPSLTFHSFAGLFLITGISTLMALFVSETLIFWQNSISMVKEYSQRWFLHSPPSTEKSNDLQSTEGTNRPSLPCDL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01942 486 Gene3D - 156 293 - -
Trre16g01942 486 PRINTS NMDA receptor signature 233 260 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre16g01942 486 PRINTS NMDA receptor signature 419 443 IPR001508 GO:0005216|GO:0006811|GO:0016020|GO:0038023
Trre16g01942 486 Pfam Ligand-gated ion channel 396 428 IPR001320 GO:0015276|GO:0016020
Trre16g01942 486 Gene3D - 358 393 - -
Trre16g01942 486 Gene3D - 30 155 - -
Trre16g01942 486 MobiDBLite consensus disorder prediction 463 486 - -
Trre16g01942 486 SUPERFAMILY Periplasmic binding protein-like II 7 396 - -
Trre16g01942 486 Gene3D - 322 357 - -
Trre16g01942 486 SMART GluR_14 36 395 IPR001320 GO:0015276|GO:0016020
Trre16g01942 486 FunFam Glutamate receptor 2.7 32 154 - -
Trre16g01942 486 Pfam Bacterial extracellular solute-binding proteins, family 3 63 395 IPR001638 -
Trre16g01942 486 CDD GluR_Plant 36 393 - -
Trre16g01942 486 MobiDBLite consensus disorder prediction 463 480 - -
Trre16g01942 486 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 456 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01942 Trre-Chr16 15591309 15594262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01942 32 452 Ion Channels AT2G29110 41.943 1.99e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01942 K05387 - tpra:123903997 761.14