Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01930 ATGAATCTAGAGCTCCCAACACCATCAACCAATGAACCTCCCCAACAAAAATTCTCTCTTCCAGTTGATTCAGAAAACAAATCAACAGTCTTCAAAATACACTCAATAGCCAAACCTCACATGCTAGCATTTCATTTATCATGGTTCTCATTCTTTGCATGTTTTGTTTCAAGTTTTGCAGCAGCACCACTTGTTCCTATAATCCGCGACAACCTTAATCTTACAGCAACAGACATAGGAAATGCCGGTGTTGCATCTGTTTCTGGTGCTGTTTTTGCAAGAATTGCAATGGGAACTGCTTGTGATTTAGTCGGTCCTCGTCTCGCTTCTGCTGCTCTTATTCTCTTGACTTCACCGGCAGTTTATTGCACTTCGATTATCAATTCTGCTACAAGTTTTCTTCTTGTAAGATTCTTCACTGGTTTTTCTTTAGCCACTTTTGTTTCTACTCAGTTTTGGATGAGTTCTATGTTTTCTACCACTGTTGTTGGCAGAGCAAATGGTTTTTCAGGTGGTTGGGGTAACCTTGGTGGAGGAGCTACACAACTTATTATGCCACTTGTATTTTCACTCATTCAAGATAATATTGGTTCAACAAAATTCACTGCATGGAGAATAGCATTTTTCATACCAGCATTTTTGCAAACTATGACAGCATTTTCAATATTAATATTTGGTCAAGATTTACCCGATGGAAATTTTGATGGTTTAAAAAAATCAGGTGAAAAAGCCAAAGATGAATTTTCAAAAGTACTTTATCATGGTGTGTTAAATTATAGAGGTTGGATTTTAGCATTGACTTATGGTTATTGTTTTGGTGTGGAGTTAACTGTTGACAATATCATAGCTGAATATTTTTATGACAAGTTTAACCTTAAACTTCATACTGCTGGAATTATTGCTGCAAGTTTTGGTTTGGCTAATGCTTTTTCTAGACCTGGTGGAGGTTTAATTTCTGATTTAATGGCTAAGAGATTTGGAATGAGGGGTAGATTATGGTGTTTGTGGATTTGTCAAACTTTGGCTGGTGTTTTTTGTGTTATTTTGGGACTTGTTGGAAGTTTAAGTGTTTCTATTGTTGTTATGATTATATTCTCTGTTTTTGTTCAAGCTGCTTGTGGAATGACTTTTTATTAG 1137 0.3606 MNLELPTPSTNEPPQQKFSLPVDSENKSTVFKIHSIAKPHMLAFHLSWFSFFACFVSSFAAAPLVPIIRDNLNLTATDIGNAGVASVSGAVFARIAMGTACDLVGPRLASAALILLTSPAVYCTSIINSATSFLLVRFFTGFSLATFVSTQFWMSSMFSTTVVGRANGFSGGWGNLGGGATQLIMPLVFSLIQDNIGSTKFTAWRIAFFIPAFLQTMTAFSILIFGQDLPDGNFDGLKKSGEKAKDEFSKVLYHGVLNYRGWILALTYGYCFGVELTVDNIIAEYFYDKFNLKLHTAGIIAASFGLANAFSRPGGGLISDLMAKRFGMRGRLWCLWICQTLAGVFCVILGLVGSLSVSIVVMIIFSVFVQAACGMTFY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01930 378 FunFam Nitrate transporter 2.1 245 378 - -
Trre16g01930 378 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 378 IPR020846 GO:0022857
Trre16g01930 378 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 11 377 IPR044772 GO:0015112
Trre16g01930 378 Gene3D MFS general substrate transporter like domains 243 378 IPR036259 -
Trre16g01930 378 SUPERFAMILY MFS general substrate transporter 35 377 IPR036259 -
Trre16g01930 378 Pfam Major Facilitator Superfamily 48 373 IPR011701 GO:0022857|GO:0055085
Trre16g01930 378 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01930 378 FunFam High affinity nitrate transporter 2.5 36 233 - -
Trre16g01930 378 CDD MFS_NRT2_like 44 377 IPR044772 GO:0015112
Trre16g01930 378 Gene3D MFS general substrate transporter like domains 35 233 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01930 Trre-Chr16 15467530 15469250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01930 16 377 Inorganic Solute Cotransporters AT1G12940 72.652 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01930 K02575 - gmx:100787888 600.897