Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01918 ATGGCGCAAGAAACCTTTGGAGATGATTCACAAGAAAAACATCTTGGTCGTTTAAAAGAGCAAGTTCGCTTGGTTAAAAAAAAAGATTGTGAACGCTACGAGGTTGCTCCAATCCAAAGCAAACTATCATTTGAGAATGGTTTTTTTATAGTGTTCCATGCATGCCAATTGTTGATCGAGAAAAATGATGGAATGCTATTAATAGGGGTGGGGGGTCCTTCAGGGGCTGGAAAGACTGTGTTTGCTGAAAAGATATTCAACTCAATGCCTGATGTTGCAGTCATTTCAATGGACAATTACAATGATTCTAGTCGAATTGTTGATGGAAACTTCGATGATCCTCGCCTAACAGACTACGAAACATTGCTCCGAAATGTACATGATTTGAAGGCAGGAAAGCCAGTTGAAGTACCTGTGTATGATTTCAAATCCAGTTCACGTACTGGATACAGGACAGTTGAAGTGCCAAGCTCTCGCATTGTGATTATAGAGGGCATTTATGCTTTGAGTGAGAGATTGCGACCTCTACTAGACCTTCGAGTATCTGTAACAGGTGGTGTTCATCTTGACCTTGTTAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTCAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTATAAGGCTTATATTGAGCCAGATCTCCAAACAGCACACGTAAAAATAACCAACAAGTTTAATCCATTTTTTGGTTTCCAAAGTCCTACTTACATATTAAAGTCAACCAGGAATGTAACAGTGGATCAAATTAAGGCCGTTATCTCCCAAGATTTTGAGGAAACAACTGAGCAAACTTATGACATATATCTTCTACCACCCGGTGAAGATCCGGAGAGCTGTCAATCATATTTACGGATGCGAAATAAGGATGGAAAATACAGTCTCATGTTTGAGGAATGGGTGACCGATGATCCATTTGTCATATCACCAAGAATTACTTTCGCGGTCAGTGTGCGTCTTCTTGGTGGACTAATGGCCCTTGGATACACAATAGCAACTATCCTAAAAAGAAGCAGTCATGTCTTATCGGATGATAGGGTTTGTGTTAAACTTGATTGGCTTGAGCAACTAAATCGTCATTATGTTCAGGTACAGGGAAGAGATCGGTTAGTTGTAACATACATAGCACAACAATTGGGTTTGGAAGATTCGTACGTTCCCCGTACCTACATTGAGCAGATTCAACTTGAAAAGCTTGTAATGGCCATGCCAGATGATTTAAAGACTAAGCTCAACCTTAATGAGGATTTGGTAACAAGTCCCAAAGCAGCATTTTTAAGAACCTCTAATGACGGCGCTCCCATGAGACATAAGCGTATAAGAAGTGATACATCTCATTCAAGTACAAATCAAAAAGATGAGAATGAATCAAAAGTTACTGAATTCATTTCGAGCAATCGAGGACTCCATGAAAATAATAATTCAGATTCTGAAACGAAACAGGAAAATCAGGGTGCCATTACTCAGCTTTCAGAACAAATTTCATCTCTGCATGATAGAATGGGCGAGTTTACAAATCGGATTGAAGAGCTGAACTCAATGTTAACCATCAAGAAAAACTCTCCCAGCCAAAAAATTATGGACCTGCAAGCTGAGTCCTATGATGGTTCGGTTCCCACCTCTTGCCTCATTACTAGTTTGAGTAATCATTCCCTAAATGGATCCATTATGTCAAATCCCTCATTGCCATCACAATTAGCTAAGGAGTCACCTATAAGAGATGAGATATCAGATATTGCACAGGGTCAACGTCAGATAATGAATCAGTTGGACAATTTGAATAATCTTTTCTGTGGGAATTTGGAAGAAAAGTCTCATCAAACAAGAACCAACAGAAAAAGCGTAATGGTGGCAGTGGCTATTGGTTGTTTGGGGATCTTGTTAATGAAGGGTTTGTTAACCTGA 1947 0.3939 MAQETFGDDSQEKHLGRLKEQVRLVKKKDCERYEVAPIQSKLSFENGFFIVFHACQLLIEKNDGMLLIGVGGPSGAGKTVFAEKIFNSMPDVAVISMDNYNDSSRIVDGNFDDPRLTDYETLLRNVHDLKAGKPVEVPVYDFKSSSRTGYRTVEVPSSRIVIIEGIYALSERLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPQEIIHQISETVYPMYKAYIEPDLQTAHVKITNKFNPFFGFQSPTYILKSTRNVTVDQIKAVISQDFEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYSLMFEEWVTDDPFVISPRITFAVSVRLLGGLMALGYTIATILKRSSHVLSDDRVCVKLDWLEQLNRHYVQVQGRDRLVVTYIAQQLGLEDSYVPRTYIEQIQLEKLVMAMPDDLKTKLNLNEDLVTSPKAAFLRTSNDGAPMRHKRIRSDTSHSSTNQKDENESKVTEFISSNRGLHENNNSDSETKQENQGAITQLSEQISSLHDRMGEFTNRIEELNSMLTIKKNSPSQKIMDLQAESYDGSVPTSCLITSLSNHSLNGSIMSNPSLPSQLAKESPIRDEISDIAQGQRQIMNQLDNLNNLFCGNLEEKSHQTRTNRKSVMVAVAIGCLGILLMKGLLT 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01918 648 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Trre16g01918 648 Pfam Phosphoribulokinase / Uridine kinase family 67 236 IPR006083 GO:0005524|GO:0016301
Trre16g01918 648 MobiDBLite consensus disorder prediction 475 501 - -
Trre16g01918 648 PANTHER URIDINE KINASE 35 413 - -
Trre16g01918 648 PRINTS Uridine kinase signature 188 198 - -
Trre16g01918 648 PRINTS Uridine kinase signature 132 147 - -
Trre16g01918 648 PRINTS Uridine kinase signature 65 82 - -
Trre16g01918 648 PRINTS Uridine kinase signature 224 237 - -
Trre16g01918 648 MobiDBLite consensus disorder prediction 446 474 - -
Trre16g01918 648 MobiDBLite consensus disorder prediction 439 501 - -
Trre16g01918 648 Gene3D - 65 277 IPR027417 -
Trre16g01918 648 CDD UMPK_like 67 239 - -
Trre16g01918 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 238 IPR027417 -
Trre16g01918 648 SUPERFAMILY CYTH-like phosphatases 264 407 IPR033469 -
Trre16g01918 648 Pfam CYTH domain 270 404 IPR023577 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01918 Trre-Chr16 15314660 15320070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01918 66 236 PRT Gene Family AT5G40870 29.444 8.72e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01918 K00876 - gmx:100781286 964.911