Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01915 ATGAGGGGTGGAAATAGGAAGCTGCATTTAAGCAAGATCTATTCGTTCACATGTTTTAAAGCGAGTTCGGTTGATGGAGATCATTTGCAGATTGGAGGTAAAGGTTATTCGAGGGTGGTTTTCTGCAATGAACAAGATAGTCCTGCTGCTACTAGTACTACTACTGAGGAAGCTGTGATTAGGAATTTTGCAGATAATTCTGTTAGATCTACAAAATATACTGCTGCTACTTTCCTTCCAAAATCACTTTTTGAACAGTTTAGGAGAGTTGCTAATTTCTATTTTTTGGTTACTGGTGTTTTGGCTTTCACTCAACTTGCTCCTTATAGAACTGTTACTGCTATTCTTCCTCTTGTTGTTGTTATTGGAGCATCTATTATGAAAGAAGGTATTGAAGATTGGCGTAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTAAAGTTCATAAAGTTGATGGCATTTTTGAATATACTGCATGGAAGAATCTGAAGGTAGGGAACATAGTGAAGGTAGAGAAGGACGAGTTCTTCCCGGCTGATCTTGTATTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTACGTTGAGACGATGAACTTGGATGGCGAGACAAATTTAAAGTTAAAACAAGGTTTAGAGGTAACTTCTTTCTTACATGATGATCTCAACTTCAAAAAATTTAAAGCTACTGTCAAATGCGAAGATCCAAATGCAAATTTGTATTCGTTTGTCGGGAGCATGGAGTTTGAAGAGCAAAAGTATCCCCTTTCTTCTCAGCAACTTCTTCTGCGAGACTCTAAACTTCGTAATACAGACTATATTTTCGGAGCTGTTATCTTCACTGGCCATGACACTAAGGTTATTCAGAATTCTACCGACCCGCCTTCAAAAAGAAGTCGGGTTGAAAAGAAGATGGATAGAGTCATCTACTTCTTGTTTTGTATTTTGTTTCTAATGGCATCTGTAGGATCTATTTTCTTCGGCTTTATAACTAAAAACGACTTGCAACATGGCTCAGTGAAAAGATGGTATTTAAGGCCTGATGCTTCGTCAATTTTCTTTGATCCAAAAAGATCGGCTGCTGCTGCTGTATATCATTGTTTGACCGCATTAATGTTATACGGCTTCTTTATTCCGATTTCTTTGTATGTGTCAATTGAAATTGTCAAAGTCCTTCAGAGCATTTTCATCAATCAAGATATTCATATGTACTACAAGGAAGCTGACAAACCAGCACATGCTCGGACTTCAAACTTGAACGAGGAGCTTGGTCAAGTTGACACAATACTTTCTGATAAAACTGGAACTTTGACCTGCAACTCAATGGAATTCATTAAATGTTCGATCGCTGGTGTAGCTTATGGCCGTGGTATTACGGAGGTTGAGAAGACCATGAGTAGAAGAAAAAGTTCAACGTTAGTTCGTGAGCGTGATATATCAGAAGAAGATGACATCAGGGCTTCTCTTGATAAAAAAGCCGCCATAAAAGGTTTTAACTTTACCGATGAAAGAATAATGAATGGTAATTGGGTTAATGAGCCTCATGCAGATGTTATCGAGAAGTTTTTTCGCCTATTGGCAGTCTGTCATACAGCCATACCAGAAGTAGATAAAGACACTGGAAATGTGTCGTACGAGGCCGAATCTCCTGATGAAGCAGCATTTGTTATTGCGGCAAGAGAACTTGGTTTTGAATTCTACAAAAGGGCTCAGACTAGTTTATCAACATACGAGTTGGATCCAGTTTCGGGCAATAAAGTTGAAAGGATGTACAAGATTCTCAATGTCTTAGAATTCAATAGCTCAAGGAAGAGAATGTCGGTAATAGTAAAAGGAAATGACGGAAAAATTCTACTACTCTGCAAAGGTGCCGACAGTGTTATGTTTGAAAGACTTGCCAAGAATGGTAGGGAATTTGAAGAGAAAACCATGGAACATGTGCATGAATACGCTGATGCAGGTCTAAGAACGCTTATACTCGCCTATCGTGAACTTGAAGCAGAAGAATACAATGATTTTGAAAACAAATTCTCTGAGGCCAAGAATTTAGTTAGTACAGACCGGGAAAGACTGATTGAGGAAGTGTCAGATAATATTGAGAAGAACCTAATCCTTCTTGGTGCCACTGCTGTTGAGGACAAGCTCCAAAATGGGGTTCCTGATTGCATTGACAAGCTTGCTCAAGCAGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCAATCAATATTGGCTTCGCTTGTAGTTTACTTAGACAAGGAATGAAACAGATTATAATTCATTTGGATAGTCCAGAAATCCAAGCACTGGAGAAGGATGGGGACAAGATAGCTATTACCAAGACATCAAGGCAGAGTGTCCTCTTTCAGATACGTGAAGGTGCTGCACAGCTTACTGCACACAGAGGGAGCTCTCAGCAAGCATTTGCTCTAATCATTGATGGCAAATCACTTGCTTATGCACTTGAGGATGATATGAAGAACATGTTTCTTGAGCTTGCAATTCGTTGTGCATCTGTTATTTGCTGTCGCTCATCACCAAAGCAGAAGGCGCTGGTCACTAGATTGGTCAAATCTGGAACCGGAAAAACAACATTAGCTATCGGTGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCTGATATTGGGGTTGGTATAAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCACAATTCCGATATTTGGAACGATTACTTCTCGTCCATGGCCATTGGTGTTACCGAAGGATCTCATCAATGATATGCTATTTTTTCTACAAGAATGTCACATTTGGTTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGAGAACCTGCATACAACGACTGGTTTTTAGCTCTCTATAATGTCTTCTTTTCATCACTTCCTGTGGTCGCTCTCGGTGTATTCGACCAGGACGTATCTGCTCGGTACTGTCTCAAGTTTCCTTTGTTATATCAAGAAGGAGTACAAAATATCCTTTTCAGTTGGCGTCGAGTACTCAGTTGGATGCTTAATGGATTCTTTAGCGCCTTATTAATTTTCTTCTTCTGCACCAAAGCGATGGAGCTACAAGCCTTTGATTCGGAGGGAAGAACCGCCGGAAGAGAAATACTAGGCGCAACCATGTACACTTGTGTAGTTTGGGTTGTAAACTTGCAAATGGCACTATCTATAAGTTACTTCACCTTGATCCAACATATTTTCATCTGGGGTTCTATTTTTATATGGTACATTTTTCTCCTAATATATGGAGCACTGCCTCAAAAGATTTCGGAAAACGCTTACAAAGTCTTCATTGAATCACTTGCTCCTTCGCCTTCCTATTGGATAGTAACATTATTTGTGGTGATCTCAACCCTTATACCATACTTCTCATACAATGCAATTCAGATGCGGTTTTTTCCGATGTATCATGAAATGGTACAGTGGATAAGGTACGAAGGGAAGACTGAGGATCCTGAGTACTGTAATATGGTGCAACAAATATCGTTGCAGCCAACGACTGTCGGTTCAACTGCACGCTTAGCTGCCAAGGCAAACCAATTGTTAGACAAAAATATTAAACGTAGATAA 3621 0.3969 MRGGNRKLHLSKIYSFTCFKASSVDGDHLQIGGKGYSRVVFCNEQDSPAATSTTTEEAVIRNFADNSVRSTKYTAATFLPKSLFEQFRRVANFYFLVTGVLAFTQLAPYRTVTAILPLVVVIGASIMKEGIEDWRRKKQDIEVNNRRVKVHKVDGIFEYTAWKNLKVGNIVKVEKDEFFPADLVLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTSFLHDDLNFKKFKATVKCEDPNANLYSFVGSMEFEEQKYPLSSQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSRVEKKMDRVIYFLFCILFLMASVGSIFFGFITKNDLQHGSVKRWYLRPDASSIFFDPKRSAAAAVYHCLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYKEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGITEVEKTMSRRKSSTLVRERDISEEDDIRASLDKKAAIKGFNFTDERIMNGNWVNEPHADVIEKFFRLLAVCHTAIPEVDKDTGNVSYEAESPDEAAFVIAARELGFEFYKRAQTSLSTYELDPVSGNKVERMYKILNVLEFNSSRKRMSVIVKGNDGKILLLCKGADSVMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELEAEEYNDFENKFSEAKNLVSTDRERLIEEVSDNIEKNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIHLDSPEIQALEKDGDKIAITKTSRQSVLFQIREGAAQLTAHRGSSQQAFALIIDGKSLAYALEDDMKNMFLELAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNVTFGFTLFLYEVYASFSGEPAYNDWFLALYNVFFSSLPVVALGVFDQDVSARYCLKFPLLYQEGVQNILFSWRRVLSWMLNGFFSALLIFFFCTKAMELQAFDSEGRTAGREILGATMYTCVVWVVNLQMALSISYFTLIQHIFIWGSIFIWYIFLLIYGALPQKISENAYKVFIESLAPSPSYWIVTLFVVISTLIPYFSYNAIQMRFFPMYHEMVQWIRYEGKTEDPEYCNMVQQISLQPTTVGSTARLAAKANQLLDKNIKRR 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01915 1206 Pfam Phospholipid-translocating ATPase N-terminal 57 115 IPR032631 -
Trre16g01915 1206 SFLD p-type atpase 414 924 IPR044492 -
Trre16g01915 1206 CDD P-type_ATPase_APLT_Dnf-like 65 1033 - -
Trre16g01915 1206 Gene3D - 709 913 IPR023214 -
Trre16g01915 1206 SUPERFAMILY HAD-like 427 928 IPR036412 -
Trre16g01915 1206 NCBIfam HAD-IC family P-type ATPase 844 955 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g01915 1206 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 667 IPR023299 GO:0000166
Trre16g01915 1206 Gene3D - 554 708 IPR023299 GO:0000166
Trre16g01915 1206 Pfam Cation transport ATPase (P-type) 540 634 - -
Trre16g01915 1206 Pfam Phospholipid-translocating P-type ATPase C-terminal 901 1151 IPR032630 -
Trre16g01915 1206 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 53 1162 - -
Trre16g01915 1206 FunFam Phospholipid-transporting ATPase 708 913 - -
Trre16g01915 1206 SFLD C1.7: P-type atpase like 414 924 - -
Trre16g01915 1206 SUPERFAMILY Calcium ATPase, transmembrane domain M 58 1151 IPR023298 -
Trre16g01915 1206 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Trre16g01915 1206 PRINTS P-type cation-transporting ATPase superfamily signature 873 892 - -
Trre16g01915 1206 SUPERFAMILY Calcium ATPase, transduction domain A 149 291 IPR008250 -
Trre16g01915 1206 ProSitePatterns E1-E2 ATPases phosphorylation site. 434 440 IPR018303 -
Trre16g01915 1206 FunFam Phospholipid-transporting ATPase 124 294 - -
Trre16g01915 1206 NCBIfam phospholipid-translocating P-type ATPase 63 1158 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre16g01915 1206 Gene3D - 127 294 - -
Trre16g01915 1206 FunFam Phospholipid-transporting ATPase 550 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01915 Trre-Chr16 15287537 15293763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01915 1 1194 Primary Pumps ATPases AT1G68710 73.496 0.0 1893
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01915 K01530 - gmx:100781421 2046.17