Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01911 ATGCAGACTGAGGTGGAAATCGTGACTGATTTGAACACTCAACTTCATTCGGAGACCATTGTTTCTGTTCAAAACGAGGATCCTGGTGTTTCAACATCTCTTGCAAATGCTGTAATCTTGCCTCAGCAGCCAGCTCCGAAGAAACCAACACGGCAATGGGCTGCTTGGACTCGTCAAGAAGAGGAAAGCTTCTTTACCGCATTACGACAAGTTGGGAAGAATTTTGAGAAAATCACTTCCCGTGTACAAAGTAAAAACAAGGATCAGGTTAGGCATTATTACTATCGGCTTGTGAGACGGATGAACAAACTTCTCGGGCCAGAATTATGTCTGGATGCCAAAAATTCAAAAGATACCAATGCTGCAATGCTTCGTTGGTGGTCTTTATTGGAAAAGTATAGATTTAAAGCCTCAAAGCTTCACCTAAAGCCTCGACGGTTTAAAATATTTTTAGAAGCCTTGGAGCACCAACTTTTGAAGGACCGGAAGAAGAATGTAAGGAAGCGACCCTTGCAGGGTGGAAATTGTCAATCTCCTGCTCTTAACACCGTCTCAAATCAAGCTAGAGCATCAGGAAATGATACCCGTGCAGTTAAAATGATTCTTGTCGAGAGTCAAAATATTATAAAACTTGGACCTTCAAAACCACCATTGAAACGCAATGTGAACATGGGTGTTAACCGTAATAATGCTAAGGGAGATTCAAATAACTCAAAACCTACGAGGCAAAGAAAGAAATCTGGAATGGCCACAACAGCTGCATATAGAAAATGGGAGAAGGCTGCAATTGCTGGCGTCTCTTTAGTTGCAGATGCTGCTGAGCATTTGGAGCGAGTTGCCACTGTTAAAGAGGTTGAACATGACCAGGAGAATCCAGGGGAAAACTGTTCTGATCCTGTTGATCATGTCCTGCCCTCTTTACCCACACTTCCACAAAATCACTTTGTTGATAACAATGTGCAGAATATTGTGAAACTTAAGCTCCAATTATTCCCAATCGATGAACCCACTCGAAGAGCCTTGGAAATGGATAAACATAATCCATACTTGGAGCTTACACTTAGTACACGAAAGAAGATATCATCAATTTTAGAACATCTAAACCGTAAATGGGGCAATACAAGCATTGCAGTTGGAGAGTTGATGCTTTTTCCTTATGGTGTTCAAAAGGAAAACTTGAATACTTATCAAAGATGGAACCAGGAATCTACTCTTAGTGCGGCAGATATATATGCAGCGATAGGAAGTCCACCTTTATTCCGTATGAGGTATGGTTGGTTCTCTAATACTGAGCATGGGACATTAAATATGCAAGCACCTGTAACATCCAGCTGCACAGTTAGACAATCCAAAAATGTTGGTGATAGTATGAAGGATCAGATTGTGAATTTGGTGTCACTTTCTAAGCCATCAACTAATAATTACTCCACAGAGCACTCTGTAGATTGTGGAACATCCATGAACACAAACGGTGCTCTTACCTCTACTTCAACCTATATACCCAACACTAGAAATGGCAGTATCTACCAGAATACAAGCACTGTGGAACTTTGTGGACCTACTGCCCATATATCATTGCTTGGAAAAGATGTTGTAGATGGAGCTATAACTAGACAGTTGGAAGACATGGATGGGTTGAAATCAAACAGTGGATCAGGCCTGTCAGCTGGTGAGTGGGCTGACAGCCTTACCAACATTAGTGTGGGGGACCTACTTTCAGGAGTGTCCCAGGATCTCAATTATAACTGCATGAATCCTCTTATTGCTGAGAATTGTCGCAGTGCTCATCAGATTCCTTTTACTAGTGATTCTTTTGATGCTGCTATTGCCGCTCACATATCTAAACACCAAGACAAGATGGGACAATCAACTCTGGCATCTCATACGTCGTCCATCTGGGATGCTGAAGAAACACGTGATGCTTTCTCATTTAAAAAGGATCTTATTCGTCATGATGATGGTCCTTGTTTATCTCTCACTGCTTCTTTAGATTTTGATAAAAAGGTTCCTGAACGAAGCTTTGAGAATTTGAATAAGGTTTCACTTGAAAAAGAGAGCCTTGTGGATGATGTTGCTCAAACAGACCCTATGCCTATGGACAATTGTGAGTCCGGTGCAGATATCAAGTATCATTTAGCAAAGGATTTTAATGGGCTAGCAGATATATATTGGCCGGATTCTTTGGGACCACTGGATTTGGAAATACCATCTAATAAGTACCACAGCGATGATCCGATTTTAAGTGATAGTGGACTGAATCGCTTGATAGCCAACAGCCTGGATGCATTCCAGAATTGCTCCTTTTTTGGGATTGACAAGAAGGAAACACCATCAACAGTTGAGGCTCAAAAAACTGCCACTCTTTCAGATTTTAAAATTGGAAGTGGTATTTGA 2394 0.4123 MQTEVEIVTDLNTQLHSETIVSVQNEDPGVSTSLANAVILPQQPAPKKPTRQWAAWTRQEEESFFTALRQVGKNFEKITSRVQSKNKDQVRHYYYRLVRRMNKLLGPELCLDAKNSKDTNAAMLRWWSLLEKYRFKASKLHLKPRRFKIFLEALEHQLLKDRKKNVRKRPLQGGNCQSPALNTVSNQARASGNDTRAVKMILVESQNIIKLGPSKPPLKRNVNMGVNRNNAKGDSNNSKPTRQRKKSGMATTAAYRKWEKAAIAGVSLVADAAEHLERVATVKEVEHDQENPGENCSDPVDHVLPSLPTLPQNHFVDNNVQNIVKLKLQLFPIDEPTRRALEMDKHNPYLELTLSTRKKISSILEHLNRKWGNTSIAVGELMLFPYGVQKENLNTYQRWNQESTLSAADIYAAIGSPPLFRMRYGWFSNTEHGTLNMQAPVTSSCTVRQSKNVGDSMKDQIVNLVSLSKPSTNNYSTEHSVDCGTSMNTNGALTSTSTYIPNTRNGSIYQNTSTVELCGPTAHISLLGKDVVDGAITRQLEDMDGLKSNSGSGLSAGEWADSLTNISVGDLLSGVSQDLNYNCMNPLIAENCRSAHQIPFTSDSFDAAIAAHISKHQDKMGQSTLASHTSSIWDAEETRDAFSFKKDLIRHDDGPCLSLTASLDFDKKVPERSFENLNKVSLEKESLVDDVAQTDPMPMDNCESGADIKYHLAKDFNGLADIYWPDSLGPLDLEIPSNKYHSDDPILSDSGLNRLIANSLDAFQNCSFFGIDKKETPSTVEAQKTATLSDFKIGSGI 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01911 797 FunFam TSL-kinase interacting protein 1 56 117 - -
Trre16g01911 797 FunFam TSL-kinase interacting protein 1 16 105 - -
Trre16g01911 797 CDD SANT 55 98 IPR001005 -
Trre16g01911 797 ProSiteProfiles SANT domain profile. 56 102 IPR017884 -
Trre16g01911 797 PANTHER CRAMPED PROTEIN 37 770 - -
Trre16g01911 797 SMART sant 52 100 IPR001005 -
Trre16g01911 797 Pfam Myb-like DNA-binding domain 55 97 IPR001005 -
Trre16g01911 797 Gene3D - 2 105 - -
Trre16g01911 797 SUPERFAMILY Homeodomain-like 48 102 IPR009057 -
Trre16g01911 797 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Trre16g01911 797 MobiDBLite consensus disorder prediction 212 250 - -
Trre16g01911 797 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01911 Trre-Chr16 15228245 15234200 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g01911 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01911 - - psat:127074900 1389.79