Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01906 ATGGATTCTTTTTTAACCCTTGAAACACCTTCTCCATCTCCTACACCTTCTCATCCTGTTAATGTTCCTAATTTTGCATTTTCTAATCAAATCCCTAATATTTTACCCCCAAATTCAAACACTTTCATTTCACCCCCAAATTCAACAACCACCTTCATTTCACCACCAAACACCACCATTTCTGCAGGACAACCGTTTCAGACGTTACTTGTTCCAAAGGCTGAACCTTTTGATGATTTCTTCGCTACCCAAGATACTCAACAACAACCTTTTTGTTCTCCTGGTTCTGGGCAAAATGAGCAATCTGAGTTATACAATGAATTCTACCGTGTTTCTGAGCTATTCAATTCTACTTTCGATACTGTTGATTCTCAGTCATTGGAGATTGAGAATAATAATGATCGTGCTCTTGTTGTTGTTCCTGAGAGACAAGAATCCAGTTCACAGGTTGCTGTGGTTAGAAAGAGGGCTAATCAGGTTATGGAGCTGGTGAGGGTGTCGGATCTGAGTGTTAAAGATCAGATAAATTTGCGGGAGTTAATGAGGAAGACTAGAATGGTTTACGATTCGCTACGCGTTTTAGCGAGTATTGAGGAGGAAAAGAGGATGGCTGAGGAGAGGAGAACGGCTGCTGAAGTTGCAATTGTAGAGGAGGAGAGGAGGCTGATTGAGGAGAGGAGGCTGGCTGAAGAGAGGAGATTGGTTGCTGAGGTTGCATTGATGGAAGCTGAGATGGGAGTTGGTGAAGAGAGAAATGTGGAGGGAGCTCCTGCAGGGGTGGATGTGGAAACGCCGATTAGAAAACGGGGACGCGTTCGCAACCGTATCCGCGGTGATATGAGGGCAGCTGCGTTGATGAGGAAACGTGAGCTGTGGCTGTATCGCGATAAGCGGATAGTTGGGCCGATACCTGGAGTCTATGTCGGCGATGTGTTTCTTTTTAGGATGGAGTTGTGCGTAGTCGGTTTGCACATGCAAATACAGGCTGGGATTGACTATCTACCCAAGAGCAGATGTTCCAATGGCGAGCCCATTGCTACCAGTGTCATTGTCTCGGGTGGGTACGAAGATGACATGGAGCTAGATGATGGAGATGTGATAATTTACACTGGCCATGGAGGACAAGAGAAGAATTCCTCCAGGCAAATATGCGATCAGAAATTGGTGGGCGGAAACCTTGCTTTAGAAAGGAGCATGCACTACGGCATTGAGGTTAGGGTTATCCGTGGGATGAAGTACGAAGGGAGTGCGTCCGGTTCTGGTAAGGTATATGTATACGACGGACTATATAGAATAGTTGATTGTTGGTTTGACGTAGGAAAATCTGGCTTTGGTGTTTACAAATACAAGCTATTGAGAATAGAGGGGCAAGCCAAGTTGGGCAGCGCTGTTCTGAAAGAAGCCAGAGATATTAAAAAAAGTGGGTTAGATTTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCAAACAAGAGGGAGAGTGTTCCTGTTAGGCTCTTTAATGACATAGATGACAATCAGGAACCTCTTTTTTATGAGTATCTTCGGAATACTAGTTTTCCGCAATTTGTGTTTCATCAGAGTGGGAAAGCTACTGGTTGTCAGTGTGTGGAAGCTTGTACTGATGGTTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCTTATAATCTACAGGGTTTACTTGTGAGAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCCTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGCTCAAATTTAGGCTGGAAGTGTTTAGGTCTACTCAGACGGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAGGCTGGAGCTTTTATCTCCGAGTTTTGGCCATGGATAGCTGGGGCTTGCCATGATTTTCAGAAGGCTTCAACCTTACCAAATTTCATGGAACTTTTGGAAGTGCTTCTTTAA 1953 0.4429 MDSFLTLETPSPSPTPSHPVNVPNFAFSNQIPNILPPNSNTFISPPNSTTTFISPPNTTISAGQPFQTLLVPKAEPFDDFFATQDTQQQPFCSPGSGQNEQSELYNEFYRVSELFNSTFDTVDSQSLEIENNNDRALVVVPERQESSSQVAVVRKRANQVMELVRVSDLSVKDQINLRELMRKTRMVYDSLRVLASIEEEKRMAEERRTAAEVAIVEEERRLIEERRLAEERRLVAEVALMEAEMGVGEERNVEGAPAGVDVETPIRKRGRVRNRIRGDMRAAALMRKRELWLYRDKRIVGPIPGVYVGDVFLFRMELCVVGLHMQIQAGIDYLPKSRCSNGEPIATSVIVSGGYEDDMELDDGDVIIYTGHGGQEKNSSRQICDQKLVGGNLALERSMHYGIEVRVIRGMKYEGSASGSGKVYVYDGLYRIVDCWFDVGKSGFGVYKYKLLRIEGQAKLGSAVLKEARDIKKSGLDFKPMYCLSVDISNKRESVPVRLFNDIDDNQEPLFYEYLRNTSFPQFVFHQSGKATGCQCVEACTDGCFCSMKNGGEFPYNLQGLLVRGKPLIFECGPFCSCPPNCRNRVAQKGLKFRLEVFRSTQTGWGVRSLDLIQAGAFISEFWPWIAGACHDFQKASTLPNFMELLEVLL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01906 650 ProSiteProfiles Pre-SET domain profile. 532 590 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre16g01906 650 SUPERFAMILY SET domain 478 626 IPR046341 -
Trre16g01906 650 Coils Coil 194 221 - -
Trre16g01906 650 SMART G9a_1 296 457 IPR003105 -
Trre16g01906 650 Gene3D SET domain 462 636 IPR046341 -
Trre16g01906 650 Gene3D - 298 461 IPR036987 -
Trre16g01906 650 ProSiteProfiles YDG domain profile. 301 453 IPR003105 -
Trre16g01906 650 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 105 622 - -
Trre16g01906 650 Pfam Pre-SET motif 488 585 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre16g01906 650 SMART preset_2 485 577 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre16g01906 650 SUPERFAMILY PUA domain-like 282 465 IPR015947 -
Trre16g01906 650 Pfam SAD/SRA domain 300 457 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01906 Trre-Chr16 15196552 15199845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01906 297 622 Su(var)3-9 homologs AT1G73100 44.377 2.72e-82 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01906 - K11420 tpra:123924427 795.423