Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01901 ATGTCTCGTTCAGTTCCTTTGGTTTCCACCATCTTTGTCTTGCTTCTCCTTCTTGTAGCCACTGGGCCAAGTATGGTGGCTGAGGCAAGGACATGTGAGTCACAAAGTCACAAATTCAAAGGACCATGTGCGAGTGACCACAACTGTGCTTCTGTGTGCCAAACAGAACGTTTCCCTGGAGGACACTGCCGTGGATTCCGTCGTAGATGCTTTTGCACTAAACATTGTTAA 231 0.4762 MSRSVPLVSTIFVLLLLLVATGPSMVAEARTCESQSHKFKGPCASDHNCASVCQTERFPGGHCRGFRRRCFCTKHC 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01901 76 Pfam Gamma-thionin family 30 76 - -
Trre16g01901 76 SUPERFAMILY Scorpion toxin-like 30 76 IPR036574 -
Trre16g01901 76 PANTHER DEFENSIN-LIKE PROTEIN 1 8 76 - -
Trre16g01901 76 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952
Trre16g01901 76 CDD Knot1 41 73 IPR003614 GO:0006952
Trre16g01901 76 PRINTS Purothionin signature 31 46 IPR008176 GO:0006952
Trre16g01901 76 PRINTS Purothionin signature 61 75 IPR008176 GO:0006952
Trre16g01901 76 Gene3D - 30 76 IPR036574 -
Trre16g01901 76 SMART gth_4 31 76 IPR003614 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01901 Trre-Chr16 15136923 15137389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01901 1 76 Plant Defensins Gene Families AT2G02130 59.740 1.76e-29 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01901 - - gmx:547843 125.176