Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01889 ATGATAACTGCAAGAGGTGAAAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCCTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTCCGGGGAACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAATAAGGTTCATCGAGCTTGTATTGAAAGAGAGATTATATCATTACTTGATCATCCTTTTCTTCCAGCACTATACACCTCATTTCAGACAGACACACATGTATGTTTGATTACGGACTTCTGCCCTGGAGGTGAGTTGTTCGGATTACTCGACAGGCAACCCATGAAGATTTTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTGGAATATCTCCATTGTTTGGGTATAATTTATCGGGACTTAAAGCCTGAAAATCTCTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTTGATCTATCATTTATTACATCTTGTAAACCTCAGGTTGTAAAGCAGTCATTACCTGGTAGTAGAAGATCTCGAAGTCAGCCACCACCATTATTTGTTGCAGAGCCAATTACACAGTCAAACTCATTTGTTGGAACTGAAGAGTATATTGCCCCGGAAATCATAACTGGAGCGAGGCATACAAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTATACGGTCGTACACCATTTAGAGGAAAGAATAGACAAAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAGGCAGCCGTTTAGGTTCAACTACAGGAGCCAATGATATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGACGTTCCTCTTCAATTTATAGGAATTGATCCAACGGCAAAGGACAAGAAATGGGAAGATGATGGTGTGCTAACTAGCTCCATTGATATGGATATTTTTTGA 1050 0.4038 MITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPALYTSFQTDTHVCLITDFCPGGELFGLLDRQPMKILKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENLLLQKDGHIVLTDFDLSFITSCKPQVVKQSLPGSRRSRSQPPPLFVAEPITQSNSFVGTEEYIAPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPGSRLGSTTGANDIKQHPFFRGINWPLIRNMSPPPLDVPLQFIGIDPTAKDKKWEDDGVLTSSIDMDIF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01889 349 FunFam Putative LOV domain-containing protein 98 312 - -
Trre16g01889 349 Gene3D Transferase(Phosphotransferase) domain 1 98 314 - -
Trre16g01889 349 Gene3D Phosphorylase Kinase; domain 1 13 97 - -
Trre16g01889 349 SUPERFAMILY Protein kinase-like (PK-like) 8 328 IPR011009 -
Trre16g01889 349 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Trre16g01889 349 Pfam Protein kinase domain 17 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01889 349 ProSiteProfiles Protein kinase domain profile. 14 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01889 349 FunFam LOV domain-containing protein 13 97 - -
Trre16g01889 349 CDD STKc_phototropin_like 12 323 - -
Trre16g01889 349 PANTHER FLIPPASE KINASE 1-RELATED 4 316 - -
Trre16g01889 349 SMART serkin_6 14 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01889 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01889 Trre-Chr16 14987302 14993152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01889 2 348 AGC Kinase Gene Family AT5G58140 82.471 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre16g01889 Pkinase 3.1e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01889 K20715 - gmx:100804783 641.343