Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01888 ATGCGGAAATATCTCAAAATGATTGAAATAACTGCAAGAGGTGAAAAAATTGGCCTTCATCATTTTTCTCCCATAAGGCCCTTGGGTTGTGGAGATACTGGCAGTGTTCATTTAGTGGAACTCCGGGGAACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTAATGCTAAATCGTAATAAGGTTCATCGAGCTTGTATTGAAAGAGAGATTATATCATTACTTGATCATCCTTTTCTTCCAGCACTATACACCTCATTTCAGACAGACACACATGTATGTTTGATTACGGACTTCTGCCCTGGAGGTGAGTTGTTCGGATTACTCGACAGGCAACCCATGAAGATTTTAAAAGAAGATTCAGCAAGATTCTATGCAGCAGAGGTTGTTATTGGTTTGGAATATCTCCATTGTTTGGGTATAATTTATCGGGACTTAAAGCCTGAAAATCTCTTACTTCAGAAGGATGGCCATATTGTATTAACTGATTTTGATCTATCATTTATTACATCTTGTAAACCTCAGGTTGTAAAGCAGTCATTACCTGGTAGTAGAAGATCTCGAAGTCAGCCACCACCATTATTTGTTGCAGAGCCAATTACACAGTCAAACTCATTTGTTGGAACTGAAGAGTATATTGCCCCGGAAATCATAACTGGAGCGAGGCATACAAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTATACGGTCGTACACCATTTAGAGGAAAGAATAGACAAAAGACATTTTCCAACATCTTACACAAGGATCTTACCTTTCCAAGCAGCATCCCGGCTAGTCTTGCAGCTAGGCAGTTGATTAATGCACTATTGCAAAGAGACCCAGGCAGCCGTTTAGGTTCAACTACAGGAGCCAATGATATCAAACAACATCCTTTTTTCCGTGGAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCTTTAGACGTTCCTCTTCAATTTATAGGAATTGATCCAACGGCAAAGGACAAGAAATGGGAAGATGATGGTGTGCTAACTAGCTCCATTGATATGGATATTTTTTGA 1074 0.4013 MRKYLKMIEITARGEKIGLHHFSPIRPLGCGDTGSVHLVELRGTGELYAMKAMEKSVMLNRNKVHRACIEREIISLLDHPFLPALYTSFQTDTHVCLITDFCPGGELFGLLDRQPMKILKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENLLLQKDGHIVLTDFDLSFITSCKPQVVKQSLPGSRRSRSQPPPLFVAEPITQSNSFVGTEEYIAPEIITGARHTSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILHKDLTFPSSIPASLAARQLINALLQRDPGSRLGSTTGANDIKQHPFFRGINWPLIRNMSPPPLDVPLQFIGIDPTAKDKKWEDDGVLTSSIDMDIF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01888 357 CDD STKc_phototropin_like 20 331 - -
Trre16g01888 357 ProSiteProfiles Protein kinase domain profile. 22 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01888 357 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Trre16g01888 357 FunFam LOV domain-containing protein 21 105 - -
Trre16g01888 357 SUPERFAMILY Protein kinase-like (PK-like) 12 336 IPR011009 -
Trre16g01888 357 SMART serkin_6 22 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01888 357 Pfam Protein kinase domain 25 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01888 357 FunFam Putative LOV domain-containing protein 106 320 - -
Trre16g01888 357 Gene3D Transferase(Phosphotransferase) domain 1 106 322 - -
Trre16g01888 357 Gene3D Phosphorylase Kinase; domain 1 21 105 - -
Trre16g01888 357 PANTHER FLIPPASE KINASE 1-RELATED 9 324 - -
Trre16g01888 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01888 Trre-Chr16 14986981 14993152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01888 9 356 AGC Kinase Gene Family AT5G58140 82.235 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre16g01888 Pkinase 3.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01888 K20715 - gmx:100804783 642.114