Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01884 ATGGAGAAAAAGGAATCATCATCTAAGTATGATCAACATCAAGATTCTGCTAAAAAAGGTACAAAATTTGATGGAGATTCTGTGACAGTTTCGTCTAATTCGGGAAAGAGTGAAGAACCTGTGAATAAATGGATGGCATTTGCTAACAAATCAGATGAAAACTCGACAACAACAAAGGCTACTTCTGGCAATGACGATCAAATTATAACCGAAGCAGCCATAGCCGAGAGAGCTGCGGAATGGGGACTAGTTGTTAACTCAGGCAATTTGAAAGCAGCAGTCGAGACAACAAGTTATTCATTAGACGGTGATAAGAGCAAAGGCATGTCAGATAGGTTTGCTGATTCGACAAGGACTTCCGGTGAATCGAATTATGGTTCGGAGGCTAAATTGTCAGGGTTGTTTCCAAGAGTTTCACAAGAGTTGAAGGAAGCATTGGCGACACTTCAACAAACATTTGTCGTCTCTGATGCAACTAAACCTGATTGCCCTATCTTGTATGCTAGCAGTGGTTTTTTTACTATGACCGGTTACTCTTCCAAAGAAGTTATTGGAAGGAATTGCCGATTTCTTCAAGGACCTGAAACTGACATGAATGAAGTAGCTAAAATTCGGGATGCAACGAAGAATGGGAGGAGTTATTGCGGCAGACTTTTAAACTACAAGAAAAATGGAACACCATTTTGGAATCTTCTCACTGTCACTCCAATCAAAGACGATCGTGGCAATACCATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGTGTAAATGAGAAGGCACTAAGACCAAATGGATTACCAAAATCATTAATTCGCTATGACGCTCGTCAAAAGGAGAAAGCTATGGGATCAATCACCGAGGTTGTTCAAACCGTTAAGGATCCAAAATCGATAATTCGTGGTATGAATGATGAAACTGATGCCACCAAGCATGAAGAGCTAGACAAACTCAATTATGAGTTTGCTTTGCCGAAGCTTGTCGAATCTGAGAACACTAGTAAACCACCTAGTAATCATATGTCGCGCTTTAGTTCTTACGAGGAAAGGAACAACAAGTCATCAAGAAAATCAGGAATTACTTCTTTCAAAGGTGTCAAAGGGAAATCAATGAGTGCTGTAGGGAGAGACAAGGAAAAAGCTATTATTGAACCTGAAGTTTTGATGACAAAAGAAGTAGAGTGGTCCAAATGGGAACAAAGAGAGAGAGATATAAGGCAAGGAATTGATCTAGCAACCACATTGGAGAGAATAGAAAAGAATTTTGTGATTTCTGATCCTAGACTTCCAGATTGTCCTATTATATTTGCATCAGATAGTTTTCTCGAGCTTACAGAATATACACGAGAAGAAATTTTGGGTCGAAACTGTCGGTTTCTTCAAGGACCAGAAACAGACCAAACAACTGTCTCTAGGATTAGAGATGCTATCAAAGATCAGAGGGAAATCACAGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATTTAGAACCTTTAAGAAACCGTCTTTCTGAAGGTTCTGAGCAACAAAGTGCTAAGTTGGTAAAAGCCACTGCAGAAAATGTTGATGGAGCTGTTAGAGAACTTCCTGATGCCAATTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTTTCTCCAAGACCACATAAAAGGGACAATCCTTCTTGGGTAGCTATTCAAAAGGTATCAATTTATTTGTTTCACTTCCTTTGTAGTGAAATTTATATTTCTTGCATCTAA 1854 0.3916 MEKKESSSKYDQHQDSAKKGTKFDGDSVTVSSNSGKSEEPVNKWMAFANKSDENSTTTKATSGNDDQIITEAAIAERAAEWGLVVNSGNLKAAVETTSYSLDGDKSKGMSDRFADSTRTSGESNYGSEAKLSGLFPRVSQELKEALATLQQTFVVSDATKPDCPILYASSGFFTMTGYSSKEVIGRNCRFLQGPETDMNEVAKIRDATKNGRSYCGRLLNYKKNGTPFWNLLTVTPIKDDRGNTIKFIGMQVEVSKYTEGVNEKALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKDPKSIIRGMNDETDATKHEELDKLNYEFALPKLVESENTSKPPSNHMSRFSSYEERNNKSSRKSGITSFKGVKGKSMSAVGRDKEKAIIEPEVLMTKEVEWSKWEQRERDIRQGIDLATTLERIEKNFVISDPRLPDCPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQTTVSRIRDAIKDQREITVQLINYTKSGKKFWNLFHLQPMRDQKGELQYFIGVQLDGSDHLEPLRNRLSEGSEQQSAKLVKATAENVDGAVRELPDANLRPEDLWAIHSQPVSPRPHKRDNPSWVAIQKVSIYLFHFLCSEIYISCI 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01884 617 MobiDBLite consensus disorder prediction 335 349 - -
Trre16g01884 617 SMART pas_2 140 209 IPR000014 -
Trre16g01884 617 SMART pas_2 413 482 IPR000014 -
Trre16g01884 617 MobiDBLite consensus disorder prediction 25 39 - -
Trre16g01884 617 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01884 617 MobiDBLite consensus disorder prediction 1 64 - -
Trre16g01884 617 CDD PAS 438 526 IPR000014 -
Trre16g01884 617 MobiDBLite consensus disorder prediction 333 367 - -
Trre16g01884 617 FunFam Putative LOV domain-containing protein 152 308 - -
Trre16g01884 617 ProSiteProfiles PAS repeat profile. 138 211 IPR000014 -
Trre16g01884 617 ProSiteProfiles PAC domain profile. 485 539 IPR000700 -
Trre16g01884 617 CDD PAS 165 254 IPR000014 -
Trre16g01884 617 ProSiteProfiles PAC domain profile. 212 266 IPR000700 -
Trre16g01884 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 430 526 IPR035965 -
Trre16g01884 617 Pfam PAS domain 434 526 IPR000014 -
Trre16g01884 617 Pfam PAS domain 159 255 IPR000014 -
Trre16g01884 617 SUPERFAMILY PYP-like sensor domain (PAS domain) 159 251 IPR035965 -
Trre16g01884 617 ProSiteProfiles PAS repeat profile. 411 484 IPR000014 -
Trre16g01884 617 SMART pac_2 215 257 IPR001610 -
Trre16g01884 617 SMART pac_2 488 530 IPR001610 -
Trre16g01884 617 MobiDBLite consensus disorder prediction 104 125 - -
Trre16g01884 617 MobiDBLite consensus disorder prediction 48 64 - -
Trre16g01884 617 NCBIfam PAS domain S-box protein 164 255 IPR000014 -
Trre16g01884 617 NCBIfam PAS domain S-box protein 438 526 IPR000014 -
Trre16g01884 617 PANTHER PROTEIN TWIN LOV 1 409 601 - -
Trre16g01884 617 Gene3D PAS domain 152 326 - -
Trre16g01884 617 FunFam LOV domain-containing protein 400 564 - -
Trre16g01884 617 Gene3D PAS domain 400 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01884 Trre-Chr16 14975377 14980111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01884 72 607 AGC Kinase Gene Family AT5G58140 65.876 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01884 K20715 - gmx:100804783 882.863