Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01883 ATGCTGTTAAGAAAACTCCGCGATTCAGCATCATCGTTAAAGCAGCGATCCACTACTTCTTCATCATCATCATCATCATCATCACGCTCGAATCCTTCTCATTCTCCACCTCTTCCTTTAGGTTCATTCGATTCACTACCTACTGAATTACTCCTCAAAATCATACGACTATTGGACCCTAAACAAGCAGCTAAACTCTGTATCGTTTGCAAATCATGGCGATCTCTCGTTTCCGATAACGAACTTTGGGCTTATTTTCTTCAAACACATCAACCTCTACACTTTGATTCTATTCTCTTCTCAGAAATAAACTTAACCTCCGGTTATCCTCTTCCGATCTTTGTTAATCAGTCGCCACGCGTGTCGTTTAAGCAGGTTTATGGCCAAAGGGAGCGAGTTCCTCCTGCTGTTGTCATTGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGACGAGCGTCCAATGGGGCGAACAGCTACCTTTTTGGAATTTGGTAATGTGGAAACGCCAATATATACTAGGCTTCGGCATTTTTTTGCGACTGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAACCTGTTGTTGTTTCGTTACCATTATGCCACTATGATGATACCAATTCAGCCAAAGCATCAAGACATCAGCTTAAAGAAGCAATATGCTCTGCACTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTCTATGCTGCAAATCAAACTTCTGGAATAGTTGTAAATATAGGCTTTCAAGTTACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAAGTCGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAATTTATATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAATCTATGCTATGTTGCCTATGACTATGAAGCTGAGTTATTGAAAGATACACATGCATCATTTGAAGCTATTGAAGGGAAGTTTACACTCTCAAAAGAGAGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGATGCGAGCAATGAGTTTGCACCATGCCATAGCTCTCTGTATGGACCATTGCCATTCTGCGGAATTAGCAGGCGGCAGTGATTGGTTCAAGACCATTGTCTTATCAGGAGGGTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACGTCCTCCTTATATGTCGAATGGATTCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCCGCCCCCTGGTGTTCAACAAAGAAGCAGTTCCGTCAGAATAAACTCAACCGAATCTGGTGA 1419 0.4249 MLLRKLRDSASSLKQRSTTSSSSSSSSSRSNPSHSPPLPLGSFDSLPTELLLKIIRLLDPKQAAKLCIVCKSWRSLVSDNELWAYFLQTHQPLHFDSILFSEINLTSGYPLPIFVNQSPRVSFKQVYGQRERVPPAVVIDGGSGYCKFGWSKDERPMGRTATFLEFGNVETPIYTRLRHFFATVYGRMKVKPSSQPVVVSLPLCHYDDTNSAKASRHQLKEAICSALFDMNVPAVCALNQATLALYAANQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYTVRTLKENLCYVAYDYEAELLKDTHASFEAIEGKFTLSKERFQTGEILFQPRLAGMRAMSLHHAIALCMDHCHSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLRPPYMSNGFRVIPPPHGADTAWFGAKLIGSLSTFPAPWCSTKKQFRQNKLNRIW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01883 472 Gene3D - 33 134 - -
Trre16g01883 472 SUPERFAMILY Actin-like ATPase domain 135 256 IPR043129 -
Trre16g01883 472 CDD NBD_sugar-kinase_HSP70_actin 137 281 - -
Trre16g01883 472 Pfam Actin 215 459 IPR004000 -
Trre16g01883 472 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Trre16g01883 472 PANTHER ACTIN 175 461 IPR004000 -
Trre16g01883 472 Pfam F-box-like 44 84 IPR001810 GO:0005515
Trre16g01883 472 SUPERFAMILY F-box domain 31 103 IPR036047 GO:0005515
Trre16g01883 472 SMART actin_3 134 472 IPR004000 -
Trre16g01883 472 Gene3D - 241 438 - -
Trre16g01883 472 Gene3D Actin; Chain A, domain 4 284 366 - -
Trre16g01883 472 SMART fbox_2 46 86 IPR001810 GO:0005515
Trre16g01883 472 Gene3D - 137 464 - -
Trre16g01883 472 SUPERFAMILY Actin-like ATPase domain 251 460 IPR043129 -
Trre16g01883 472 MobiDBLite consensus disorder prediction 12 38 - -
Trre16g01883 472 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01883 Trre-Chr16 14954453 14961947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01883 183 458 Cytoskeleton Gene Families AT5G09810 33.333 3.88e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01883 K16616 - gmx:100804254 710.679