Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01882 ATGGCGATGCTGTTAAGAAAACTCCGCGATTCAGCATCATCGTTAAAGCAGCGATCCACTACTTCTTCATCATCATCATCATCATCATCACGCTCGAATCCTTCTCATTCTCCACCTCTTCCTTTAGGTTCATTCGATTCACTACCTACTGAATTACTCCTCAAAATCATACGACTATTGGACCCTAAACAAGCAGCTAAACTCTGTATCGTTTGCAAATCATGGCGATCTCTCGTTTCCGATAACGAACTTTGGGCTTATTTTCTTCAAACACATCAACCTCTACACTTTGATTCTATTCTCTTCTCAGAAATAAACTTAACCTCCGGTTATCCTCTTCCGATCTTTGTTAATCAGTCGCCACGCGTGTCGTTTAAGCAGGTTTATGGCCAAAGGGAGCGAGTTCCTCCTGCTGTTGTCATTGACGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGACGAGCGTCCAATGGGGCGAACAGCTACCTTTTTGGAATTTGGTAATGTGGAAACGCCAATATATACTAGGCTTCGGCATTTTTTTGCGACTGTCTATGGCAGGATGAAGGTGAAACCAAGTTCTCAACCTGTTGTTGTTTCGTTACCATTATGCCACTATGATGATACCAATTCAGCCAAAGCATCAAGACATCAGCTTAAAGAAGCAATATGCTCTGCACTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAGGCAACTTTAGCTCTCTATGCTGCAAATCAAACTTCTGGAATAGTTGTAAATATAGGCTTTCAAGTTACATCTGTAGTTCCAATTTTAAATGGTAAAGTGATGCGAAAAGTCGGTGTGGAGGTTGTGGGGCTGGGAGCACTAAAACTTACAGGATTTCTTAGAGAGAAAATGCAACAAAACAATTTATATTTTGAATCTTTGTACACTGTTCGCACACTGAAAGAGAATCTATGCTATGTTGCCTATGACTATGAAGCTGAGTTATTGAAAGATACACATGCATCATTTGAAGCTATTGAAGGGAAGTTTACACTCTCAAAAGAGAGGTTTCAAACAGGAGAGATCTTATTCCAGCCACGTCTTGCTGGGATGCGAGCAATGAGTTTGCACCATGCCATAGCTCTCTGTATGGACCATTGCCATTCTGCGGAATTAGCAGGCGGCAGTGATTGGTTCAAGACCATTGTCTTATCAGGAGGGTCTGCATGTTTACCAGGTTTAGCAGAAAGGTTAGAGAAGGAACTTCATTCGTTACGTCCTCCTTATATGTCGAATGGATTCAGAGTCATCCCTCCTCCACATGGTGCGGATACTGCATGGTTTGGTGCAAAGCTTATTGGCAGTTTGAGCACATTTCCCGCCCCCTGGTGTTCAACAAAGAAGCAGTTCCGTCAGAATAAACTCAACCGAATCTGGTGA 1425 0.426 MAMLLRKLRDSASSLKQRSTTSSSSSSSSSRSNPSHSPPLPLGSFDSLPTELLLKIIRLLDPKQAAKLCIVCKSWRSLVSDNELWAYFLQTHQPLHFDSILFSEINLTSGYPLPIFVNQSPRVSFKQVYGQRERVPPAVVIDGGSGYCKFGWSKDERPMGRTATFLEFGNVETPIYTRLRHFFATVYGRMKVKPSSQPVVVSLPLCHYDDTNSAKASRHQLKEAICSALFDMNVPAVCALNQATLALYAANQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQQNNLYFESLYTVRTLKENLCYVAYDYEAELLKDTHASFEAIEGKFTLSKERFQTGEILFQPRLAGMRAMSLHHAIALCMDHCHSAELAGGSDWFKTIVLSGGSACLPGLAERLEKELHSLRPPYMSNGFRVIPPPHGADTAWFGAKLIGSLSTFPAPWCSTKKQFRQNKLNRIW 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01882 474 MobiDBLite consensus disorder prediction 1 42 - -
Trre16g01882 474 Gene3D Actin; Chain A, domain 4 286 368 - -
Trre16g01882 474 ProSiteProfiles F-box domain profile. 42 88 IPR001810 GO:0005515
Trre16g01882 474 SMART fbox_2 48 88 IPR001810 GO:0005515
Trre16g01882 474 SUPERFAMILY Actin-like ATPase domain 137 258 IPR043129 -
Trre16g01882 474 SUPERFAMILY Actin-like ATPase domain 253 462 IPR043129 -
Trre16g01882 474 MobiDBLite consensus disorder prediction 14 40 - -
Trre16g01882 474 Pfam F-box-like 46 86 IPR001810 GO:0005515
Trre16g01882 474 Gene3D - 139 466 - -
Trre16g01882 474 Gene3D - 243 440 - -
Trre16g01882 474 Pfam Actin 217 461 IPR004000 -
Trre16g01882 474 CDD NBD_sugar-kinase_HSP70_actin 139 283 - -
Trre16g01882 474 SMART actin_3 136 474 IPR004000 -
Trre16g01882 474 Gene3D - 35 136 - -
Trre16g01882 474 SUPERFAMILY F-box domain 33 105 IPR036047 GO:0005515
Trre16g01882 474 PANTHER ACTIN 177 463 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01882 Trre-Chr16 14954447 14961947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01882 185 460 Cytoskeleton Gene Families AT5G09810 33.333 3.51e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01882 K16616 - gmx:100804254 712.22