Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01874 ATGAGTAACACTGACGTCGATAAAACCTTAAAAGAAAAGGAGCCTAGGACGCCTCCAGCAGCTACGTCACAGGAGCAGTCTTCAACGACAACTGGCACTCCGGCAGTTAATCCTGAATGGGCTAACTATCAGGCATATTCTCCTATACCTCCACCTGGATACATGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATCATGCCTCCTTATGGCACCCCACCACATCCTTATGTCACAATGTATCCCCATGGTGGCATATATGCACATCCATCCATACCTCCGGGATCTTATCCTTTTAGTCCTTATGCTATGCCTTCTCCAAATGGTATGGTGGATGCTTCAGGGAATACTCCAGGCAGCAGTGAAGCAGACGGTAAACCTCACGAGGTGAAGGAAAAATTACCAATCAAAAGATCTAAAGGAAGTATGGGTAGTATGAATATGGTTACAGGAAAAAATAATGAACTTGGCAAAACGCCAGGGGCATCTGCCAATGGAATTCATACTAAAAGTGGTGAGAGTGCAAGTGAAGGTACCAGTGAAGGAAGCAATGAAAACTCCCATAATGACTCTCAATTGAAATCCGGGGAGAGGCAGGACTCTTTTGATGATCACGAACCTTCTCAAAATGGCAATTCGGTACATGCTCCTCAAAATGGGGCACTTAATACGCCACCTACAGTTAACCAGACTATGTCTGTCGTACCTATGTCTGTTACTGGTCCTCTCACAACAGTTCCTGGTCCCACTACTAACTTAAATATAGGAATGGAGTATTGGGGAACACCAACTTCATCCACCATTCCTGCAATGCATGGAAAGGTACCTTCTACTGCAGTTGCTGGAGGGATGGTTAATGCTGGGCCACGAGATGGTGTTCATTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGCGGAAACAGTCTAACAGGGAATCTGCACGTAGATCCAGGTTGCGAAAGCAGGCTGAATGTGATGAACTAGCTCAGCGTGCTGATGTTTTGAATGTAGAAAATGCCTCTCTCCGTGCTGAACTGAGCCGGATCAAGAGTGAGTACGAGAAGGCACTTTCTGAGAATGCAGCTCTCAAGGAGAGACTCGGGGAGATACCAAAGAACGAGGATCTTGCACCTGCCCAGAATGATCAGCATGCGGGTGAAGTCACTCAACAGAGTGGTTAG 1209 0.4657 MSNTDVDKTLKEKEPRTPPAATSQEQSSTTTGTPAVNPEWANYQAYSPIPPPGYMASSPQAHPYMWGVQHIMPPYGTPPHPYVTMYPHGGIYAHPSIPPGSYPFSPYAMPSPNGMVDASGNTPGSSEADGKPHEVKEKLPIKRSKGSMGSMNMVTGKNNELGKTPGASANGIHTKSGESASEGTSEGSNENSHNDSQLKSGERQDSFDDHEPSQNGNSVHAPQNGALNTPPTVNQTMSVVPMSVTGPLTTVPGPTTNLNIGMEYWGTPTSSTIPAMHGKVPSTAVAGGMVNAGPRDGVHSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLNVENASLRAELSRIKSEYEKALSENAALKERLGEIPKNEDLAPAQNDQHAGEVTQQSG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01874 402 Gene3D - 310 365 - -
Trre16g01874 402 Pfam G-box binding protein MFMR 1 98 IPR012900 -
Trre16g01874 402 MobiDBLite consensus disorder prediction 1 15 - -
Trre16g01874 402 SUPERFAMILY Leucine zipper domain 310 363 IPR046347 GO:0003700|GO:0006355
Trre16g01874 402 PANTHER G-BOX-BINDING FACTOR 3-RELATED 17 396 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre16g01874 402 MobiDBLite consensus disorder prediction 148 195 - -
Trre16g01874 402 SMART brlzneu 307 371 IPR004827 GO:0003700|GO:0006355
Trre16g01874 402 MobiDBLite consensus disorder prediction 129 143 - -
Trre16g01874 402 Pfam Disordered region downstream of MFMR 137 274 - -
Trre16g01874 402 Pfam bZIP transcription factor 307 369 IPR004827 GO:0003700|GO:0006355
Trre16g01874 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 314 329 IPR004827 GO:0003700|GO:0006355
Trre16g01874 402 MobiDBLite consensus disorder prediction 211 234 - -
Trre16g01874 402 MobiDBLite consensus disorder prediction 196 210 - -
Trre16g01874 402 MobiDBLite consensus disorder prediction 19 38 - -
Trre16g01874 402 Coils Coil 334 375 - -
Trre16g01874 402 MobiDBLite consensus disorder prediction 308 331 - -
Trre16g01874 402 CDD bZIP_plant_GBF1 312 362 IPR045314 GO:0003700|GO:0006355
Trre16g01874 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 309 372 IPR004827 GO:0003700|GO:0006355
Trre16g01874 402 MobiDBLite consensus disorder prediction 1 38 - -
Trre16g01874 402 MobiDBLite consensus disorder prediction 113 234 - -
Trre16g01874 402 MobiDBLite consensus disorder prediction 375 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01874 Trre-Chr16 14855859 14860278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01874 1 402 bZIP Transcription Factor Family AT2G35530 61.369 5.01e-165 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre16g01874 MFMR_assoc 1.7e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01874 K09060 - gmx:100101912 599.356