LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g01868	ATGGAAATACAAAGTGTGATGCTCGTTTTGGTAATCTTATGGGCTGAAATTCATCTCATCTCTTCATACACTGATCCTCAAGATGCTGCTGCACTTAGATCTCTTAAAGATATATGGGAAAATACACCACCCAGCTGGGACAAATCATCAGATGACCCTTGTGGAGCACCATGGGAAGGAGTGACTTGCAACAAATCAAGGGTTACTTCATTGGGACTATCAACCATGGGCTTGAAGGGTAAATTAAGTGGAGACATTGGTGGACTCACTGAATTAAGATCCTTGGATTTGTCCTTTAATAAAGGTTTAATGGGTCCTATCTCTCCAGAATTGGGAGACTTAAGCCAGCTTAATATTCTGATTTTGGCTGGTTGTAGCTTCAGTGGTAATATTCCAGATAAATTTGGAGATCTTTCAGAGCTATCTTTCTTGGCTTTAAATTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGGAAACTCTCCAAGCTTTATTGGTTGGACTTGGCAGACAATCAGCTTACAGGACCTATCCCAGTTTCAACTTCCACTACCCCTGGCTTAGACCTTCTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAATCAGCTTTCTGGTTCCATTCCACCAAAACTTTTCAGCTCTGACATGAAACTCATACATATATTATTTGATAAGAATGATTTAAGTGGAAGTATACCTTCAACAATAGGACTAGTTCAGACAGTTGAGGTTCTTCGGCTCGATCGAAATTTCTTGACAGGAGAAGTTCCTTCAAATCTCAACAACCTTAGTAACATCAATGAATTGAATTTAGCACACAACAATTTGTCAGGTCCATTGCCAGACTTAACTTCAATGGATACCCTCAACTATGTGGATCTTAGTAACAACAATTTTGATTCATCAGAAGCTCCAATTTGGTTAACAACTCTACCATCACTCACCACACTTATAATGGAGTTTGGATCTCTTGAAGGACCTCTTCCACCAAAACTCTTCAGCCTTCCTCAAATACAGCAAGTGAAACTAAGAAGCAATGCATTGAACAATACACTAAACATGGGCAACAACATTTGTCCGCAGCTGCAGCTTGTTGATTTACAAAACAATAAGATTTCAACAGTAACAGTCAGTTCACAATACAAAAATACATTGATTCTCATAGGAAATCCAGTTTGCGATATTGCTCTCTCTAATACAAATTACTGCAACCTTCAGCAACAGCCTAAACAACCCTATTCAACTAGCCTGGTGAATTGTGGAGCAATAACATGTCCCCCCGAACAAAAACTCAGTCCACAAAGTTGTGAATGTGCTTATCCATATCAAGGAATGTTCTACTTTAGAGGACCTTTGTTTAGAGAATTGTCTAATATAAGTACTTTTCATTCACTTGAAATGAGCTTATGGGTGAAATTAGGCTTAACACCTGGTTCAGTTTCTTTACAAAATCCATTTTTCAATGGTGATGATTATCTTGAAATGCAACTAGCACTCTTTCCACCAACAGGACTATATTTTAATAGGTCAGAAGTTCAAAGGATCGGATTTTCATTGAGTAATCAAACTTACAAGCCGCCACATGAATTTGGACCCTATTACTTCATTGCATTTCCTTATGCTTTTCCAGATTCGCGCAAAGGATCTACTTTTAGCAGAGGTATTATTATTGCGATAGCAGCTGGGAGCACATTTCTGGTTTTGTGCCTCATAGGGTTAATTGTATACGCAATCCTGCAAAAGAAGCGCGCAGAGAAAGCCATCGGAATAAGTAGACCATTTGCATCATGGGCACCAAGTGGTAAGGATAGTGGAGGTGCACCACAATTGAAGGGAGCAAGATGGTTCTCTTACGATGAACTCAAAAAGTGCACCAACAATTTCTCTGGAAGCAATGAACTCGGCTTTGGTGGCTATGGCAAGGTGTACAAAGGGGTATTCCCTGATGGAAAAATAGTTGCAATCAAAAGAGCTCAGCAAGGATCAATGCAAGGAGGCCTAGAGTTCAAGAATGAAATCGAGTTACTTTCAAGAGTTCATCACAAGAATCTTGTTAGCCTAGTTGGATTCTGCTTTGAACAAGGAGAACAAATGTTGGTTTATGAATATATCTCCAATGGAACACTTAGGGAGGGTTTGTCAGGGAAATATGGTACTCAACTTGATTGGAAGAGGAGACTCCGTATTGCTCTTGGCTCGGCTAGAGGACTTGCATACTTACATGAACTTGCCAACCCTCCCATAATCCATAGAGATGTTAAGTCAACCAATATCTTGCTGGATGAAAATTTGACAGCAAAGGTTGCAGATTTTGGCTTGTCTAAGCTGGTTTCAGACAGTGAGAAAGGTCATGTCTCAACTCAGGTTAAAGGGACATTGGGCTATCTAGATCCTGAATATTACATGACACAACAACTAACCGAAAAGAGTGATGTATACAGTTTCGGTGTAGTTATGCTTGAACTGATAACATCCAAGCAACCACTCGAAAAGGGTAAGTACATCGTTCGAGAGTTTCGAACCTTAATGAACAACAAAGATGAAGAGTATTATGGTATAAGAGAACTAATGGATCCAGTGGTGAGAAACACAGTGAACCTCATAGGATTCGGGAGGTTCTTAGAGTTAACAATGCAATGTGTCGAGGAATTGGCTTCAGCTCGTCCAACAATGAGTGAAGTTGTGAAAACATTAGAAACTATATTACAAAATGATGGAATGAATACAAATTCTACTTCTGCTTCTTCATCTGCCAATGACTTTGGAGTTTCTAAGGGTGGTGCTGCAATGAGACATCCTTACATTGATAATACTTTTACTAAGAAGGATGATGTTATTGAGAGCAATGAATTTGATTACAGTGGAGGGTACACACTTTCAAATAAAGTGGAACCTAAATAG	2907	0.3922	MEIQSVMLVLVILWAEIHLISSYTDPQDAAALRSLKDIWENTPPSWDKSSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGGLTELRSLDLSFNKGLMGPISPELGDLSQLNILILAGCSFSGNIPDKFGDLSELSFLALNSNNFTGKIPPSLGKLSKLYWLDLADNQLTGPIPVSTSTTPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSDMKLIHILFDKNDLSGSIPSTIGLVQTVEVLRLDRNFLTGEVPSNLNNLSNINELNLAHNNLSGPLPDLTSMDTLNYVDLSNNNFDSSEAPIWLTTLPSLTTLIMEFGSLEGPLPPKLFSLPQIQQVKLRSNALNNTLNMGNNICPQLQLVDLQNNKISTVTVSSQYKNTLILIGNPVCDIALSNTNYCNLQQQPKQPYSTSLVNCGAITCPPEQKLSPQSCECAYPYQGMFYFRGPLFRELSNISTFHSLEMSLWVKLGLTPGSVSLQNPFFNGDDYLEMQLALFPPTGLYFNRSEVQRIGFSLSNQTYKPPHEFGPYYFIAFPYAFPDSRKGSTFSRGIIIAIAAGSTFLVLCLIGLIVYAILQKKRAEKAIGISRPFASWAPSGKDSGGAPQLKGARWFSYDELKKCTNNFSGSNELGFGGYGKVYKGVFPDGKIVAIKRAQQGSMQGGLEFKNEIELLSRVHHKNLVSLVGFCFEQGEQMLVYEYISNGTLREGLSGKYGTQLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSTNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSKQPLEKGKYIVREFRTLMNNKDEEYYGIRELMDPVVRNTVNLIGFGRFLELTMQCVEELASARPTMSEVVKTLETILQNDGMNTNSTSASSSANDFGVSKGGAAMRHPYIDNTFTKKDDVIESNEFDYSGGYTLSNKVEPK	968

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g01868	968	Pfam	Leucine rich repeat N-terminal domain	26	64	IPR013210	-
	Trre16g01868	968	Gene3D	Phosphorylase Kinase; domain 1	604	705	-	-
	Trre16g01868	968	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	750	762	IPR008271	GO:0004672\|GO:0006468
	Trre16g01868	968	SUPERFAMILY	Protein kinase-like (PK-like)	615	911	IPR011009	-
	Trre16g01868	968	ProSitePatterns	Protein kinases ATP-binding region signature.	636	658	IPR017441	GO:0005524
	Trre16g01868	968	FunFam	Leucine-rich repeat family protein	27	184	-	-
	Trre16g01868	968	Gene3D	Ribonuclease Inhibitor	26	185	IPR032675	-
	Trre16g01868	968	Gene3D	Ribonuclease Inhibitor	287	397	IPR032675	-
	Trre16g01868	968	CDD	STKc_IRAK	636	903	-	-
	Trre16g01868	968	Gene3D	Transferase(Phosphotransferase) domain 1	706	925	-	-
	Trre16g01868	968	ProSiteProfiles	Protein kinase domain profile.	630	904	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01868	968	FunFam	Predicted protein	187	408	-	-
	Trre16g01868	968	PANTHER	RECEPTOR-LIKE PROTEIN 55	33	903	-	-
	Trre16g01868	968	FunFam	Leucine-rich repeat protein kinase family protein	598	705	-	-
	Trre16g01868	968	SMART	serkin_6	630	903	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre16g01868	968	Gene3D	Ribonuclease Inhibitor	186	286	IPR032675	-
	Trre16g01868	968	SUPERFAMILY	L domain-like	62	396	-	-
	Trre16g01868	968	Pfam	Protein tyrosine and serine/threonine kinase	634	900	IPR001245	GO:0004672\|GO:0006468
	Trre16g01868	968	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	706	917	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g01868	Trre-Chr16	14828088	14834957	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g01868	19	968	Receptor kinase-like Gene Family	AT1G79620	69.490	0.0	1387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Trre16g01868		PK_Tyr_Ser-Thr	1.4e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g01868	-		-	gmx:100792249	1630.15