Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01866 ATGGATGTGGTTAGAGTTGGTGTTAGTAGTTGTAGTAGTGAAGCAGTGCAGGCTCAGTCAAGAGATACAGTTGAGGAGACGGCGGCTTCTTCGTCTTCTGGATGGCGTCCTAGGGAGCTTGCTTTTGCTGCTTTTGTGCCGCGAGATAAAGAAGAAGAACAACAAGAAGATGAACGTGTTAATGCTGCTGGGAAGTTCTTGAAGTATCGTGCATTTGTTAGGAGACCTTTGGTGGGACGATTGACCAAGGAAATAGTTGAAACATACCGAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAGAGATTTTTGACCAGTCCATCTATTGGAGTGCTTAATGATGGCTATGATAATGCAAACTCGGATCTTATTCTGACAGTGAATTTGGTCTTGATCCATGTAGAGAAAAGTAGAAGATATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTAGCCAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTCAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCACTGGTTGAAGTAACTATTTTAACAACGTTAAATAAGAAGTACGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTATATCAAAGACATTTGTGCATATGCTTTGAACTGCTGGACACAAATTTGTATGAGCTTATCAAAATGAATCATTTTAGGGGATTGTCAATTGGTATTGTTCAGCTGTTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCTCTGTGAAGCAGGCAGAAATAAAGATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTATTCCTATATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCCGGGGCTTCAGAGTTTGATCTTTTGAGAAGGATGATTGAAATAATTGGAGGACAACCACCTGATTATGTACTACGGGACGCCAAAAACACTAGTAAATTCTTTAAGTGTATAGGGAGTCTCCAAAACATAGAAATCAGTGAGGGTTCCAAAAATGGGCGTGTTTATCAAGCATTGACAGAGGAAGAATATGAAGCTAGAGATTTGAAGAAGCCATCAATTGGAAAAGAATATTTTAATAATATGAATCTTGAAGCAATTGTTACAAACTACCCCTACAGGAAAAACCTACCTAAGGAAGATATTGCCAAAGAAAAGCAAACGCGATTGGCTCTTATTGACTTTTTGAGAGGGCTCGTTGAATTTGACCCTGCAAAACGCTGGTCACCATTCCAGGCTTCAAAACACCCTTTTATAACTGGGGAACCTTTTACTCACCCTTACAGACCTTCCCCTGAGACCCCTTACATTCCGGTAGTTCAAAACATCAAGGTTGATAATCATCCAGGTGGAGGACACTGGTTTGCTGCTGGTTTATCACCAAATGTTGCAGGCAAAAACAGAGCATCCCTCTATAGCAGTCCGCATTTTCAGATGGTGCAACATCCACCTGCTAATAGTTATGGTAGCGTAGGAAGCCATGGGAGCTATAATGATGGTGCTGGGCTTGGAAGCAGCTATGGAAGTTATGGAGAGAGCAGTAACATGTTTGCTTACTATTCACCTATCGCTCCATCTGGTATGAACATGCACAATCAGGGTGGTATGTCAATGCTTGGAAATAGTCCTGATGCTCGGAGAAGAATTAAGTACCAACCTGGGAATGGACTGGGTGTAAGTCCATCTAGTGGAAATTTCGCTCCCTTGCCTCTTGGTGCCAGCCCATCTCAATTTACTCCACCAAGTTCCTATAATCAGATTTCAGTTGGTTCCCCAGGACATTTTGGACCTACATCTCCTGCAAGAGGAGCTTCTCATGGATCACCTTTAGGCAAGACTGCTGCAGCCAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAACTCAAGAAACAGCATTTTCTTCACATTGGCATGGTCAATATCATGATAGCACAAGCCAAACAGAGGGAACATCACAAGCTCCTGGCAGTTCACCATCATATATACAATCAAATATTAATCCTGGGAACTGGAAGCAGCGCGGAAGTGGAGGGGTTTCTGCTAATCAGAAGATTCCATCCATGGGTGTGCCTGGTTCTAATATGAACTCACAATTGACGGAATTGATTCATGACAATGTGGAGACCGGTTTTTCATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTTCTGCAAGAGGGTGGTTCAGATGAAAGCAGTTTGACAACTGAGTTTGGCAGAAGTATGAATCTTGGTTCCGTAGAACCGTGGTCTGGATTTGGAAGACTAAATGGACCTGGTCAAACATTTTCTACTGTAGAGATGGGTAGTCCCCCAACACATGATTTCCAAGCAGCATATATACACTCTATGTCAAAGCCTTTTCATCTCATGCCTCATATTTCACAAAATTCTCCAAGCCGTTTTGGACACCAATCTGTTCAAAGATATGCACATGGTAGACCACCTCAGGGTAGTGACTGGAATCAAATTAAGATTCAGGCTCCTTCTGGTTTCAGCAACGTGGGTCCGCGTTCTCCCAGGAATGCCTCATTCACTGGCAATATGTCATGGGGGCGAAGAATGAATCCTCCTGCTTCAAGCATTCCTCCGATCTCAAACGTACCACCCACATCCCGTTCAAGAAAAGATTATGCAAGGATAGACTAG 2880 0.4184 MDVVRVGVSSCSSEAVQAQSRDTVEETAASSSSGWRPRELAFAAFVPRDKEEEQQEDERVNAAGKFLKYRAFVRRPLVGRLTKEIVETYRICNPQFKYSEDLNPKRFLTSPSIGVLNDGYDNANSDLILTVNLVLIHVEKSRRYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSIGIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSSVKQAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEIIGGQPPDYVLRDAKNTSKFFKCIGSLQNIEISEGSKNGRVYQALTEEEYEARDLKKPSIGKEYFNNMNLEAIVTNYPYRKNLPKEDIAKEKQTRLALIDFLRGLVEFDPAKRWSPFQASKHPFITGEPFTHPYRPSPETPYIPVVQNIKVDNHPGGGHWFAAGLSPNVAGKNRASLYSSPHFQMVQHPPANSYGSVGSHGSYNDGAGLGSSYGSYGESSNMFAYYSPIAPSGMNMHNQGGMSMLGNSPDARRRIKYQPGNGLGVSPSSGNFAPLPLGASPSQFTPPSSYNQISVGSPGHFGPTSPARGASHGSPLGKTAAASQFNRRKNWGHSGSPQTQETAFSSHWHGQYHDSTSQTEGTSQAPGSSPSYIQSNINPGNWKQRGSGGVSANQKIPSMGVPGSNMNSQLTELIHDNVETGFSLPDPGDWDPNYSDELLLQEGGSDESSLTTEFGRSMNLGSVEPWSGFGRLNGPGQTFSTVEMGSPPTHDFQAAYIHSMSKPFHLMPHISQNSPSRFGHQSVQRYAHGRPPQGSDWNQIKIQAPSGFSNVGPRSPRNASFTGNMSWGRRMNPPASSIPPISNVPPTSRSRKDYARID 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01866 959 MobiDBLite consensus disorder prediction 907 959 - -
Trre16g01866 959 ProSiteProfiles Protein kinase domain profile. 144 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01866 959 CDD PKc_YAK1 144 486 - -
Trre16g01866 959 Gene3D Transferase(Phosphotransferase) domain 1 225 487 - -
Trre16g01866 959 SUPERFAMILY Protein kinase-like (PK-like) 138 509 IPR011009 -
Trre16g01866 959 Gene3D Phosphorylase Kinase; domain 1 109 224 - -
Trre16g01866 959 MobiDBLite consensus disorder prediction 601 755 - -
Trre16g01866 959 PANTHER DUAL SPECIFICITY PROTEIN KINASE 22 489 - -
Trre16g01866 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Trre16g01866 959 SMART serkin_6 144 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01866 959 MobiDBLite consensus disorder prediction 623 660 - -
Trre16g01866 959 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Trre16g01866 959 Pfam Protein kinase domain 145 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01866 959 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 107 223 - -
Trre16g01866 959 MobiDBLite consensus disorder prediction 907 932 - -
Trre16g01866 959 MobiDBLite consensus disorder prediction 678 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01866 Trre-Chr16 14810882 14821950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01866 140 373 MAP Kinase Gene Family AT1G18150 33.735 6.97e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Trre16g01866 Pkinase 1.5e-50 CL0016