Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01864 ATGGATCCTGGTCGCTATGCACTGCATCAAGGCTGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCACGACCCAAATTTTCGGGTCGGCGGCTCTTATGATGAAAGAAGGTTTATAGATGAAAGATATCCAAGGGATGCTGTATACCAGAGAAATAATTTCCACCGTGATGTTTTGGAAAGGGAAGCCTATTTGCCACCAGGACCTGCTGTTGGCCAATGGAGTCAATCCAAACGGAGGGGTTATGATGAAGATCATCCACTTGACAGGGAATCTAGGCGTTTTCAAAGGCCTTATCATGAACCATACAATCAAATGGATGGTTTCAGGGATCGGGAGATTGACATGTACCCGGAGTATGATAAGTTTCGAGATGGTTATACAAACATTGAAAACTACGGCGATCGAGGATATGACAAACCTGCAAGGTTTGCAGGGCATGACCGCGACGATTATGCATATGATGATTATGGCCACAAGTCCCGTGTTTCACATCATCGGAGGGAGGATAGCCATGACAGGGATTATGAACATGGTCGCCATAGTTATGATTCTGATTATGAAAAAGATAGCAGAAGAGATAGTAGTTGGAGGCGACGTGAATCACGCGATCGAGAGCGAGACAAGAGATGTCTTAGTCGGGAAAAGGATCCAAGTCCGCATAGGAAACATGAGCGTTCACGATCACGTTCACGATCCCATTCTCGATCCCGGTCCCACTCCCGTTCCCATTCTCACTCTCGTTCCCGTTCCCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCATAGTCGAAGTTATCGGGAAGACAGCTATGGTGATAATCGATATGATAGAAGTGAGAGACGCAGGGACCGTGATGATAAACATCAGCGGGAGCATTTTTCCGTGGCCCCTTCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACCGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGTCATGTTCGTGTTATCAAGGAGAGAAGTTCTGGCATCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCGGCACGAGGAATGATGGACAAACTAGGAGATGATGGTCTTGTTGTGGATGGAAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTCCAGATGGAGCTTTGAGACCTGGTCATAGTCATAAGGGCATTACAATACCATCTGATTGGATGTGCACTATATGCAGCTACATCAATTTTGCACGACGGACTTCCTGCTATCAGTGTAATGAACCACGCACCGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAACATCCTTAGGAAAGAAAGGTCTGGAGGCAGGTCCAACTCATGTATTGGTTGTTCGTGGATTGGATGAAAATGCCGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTTTCAAGGGGATTTGCATTTGTACATTTTTATTCGGTAGAAGATGCTACCAAAGCTCTTGACTTAACAAATGGAACTGCCCTTGAGAAGAATGGTCAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGCCCTGGATCAGGAGCGTCAGGAACTTCACAGTCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTAGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCAGAGCAGACTAGTACTGATGTTGGTGCACCTCAATCTGGCTTTGTTTGGGATGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGAAATACTGGTCTGTACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAGCAGTACATCCCATGCACTGATCAAAATCAGAATAAATCATCTAATAACGAGTCTGAACCTTCCAAGTCATCTGATGGTTTGAGCACTAAAAAGGTAGTGATTTCTGCACCAGCGACTATTGTTACTTCAAACGAGAAGCCAGCTTCACTGGCAGATGCCGTCCAGGCTGCTGCAGCCGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATCAAAGGAGATAAAACTTGCTTCAAAAAGCAGTATTCTGGCAAACAAGAAAAAAATGAACAATGTGCTGACAATGTGGAAACAGAGGAGTCACGAGGGACAGACTACTCGAGTGGCACTGGAGGACAATCAGTTATCTGGATCTGCTGACGATAGGCCATATTCTTCTGCACACTCTGCAAAGAATAAGTTAAAAAATGACGCATCATCCAGGGAAATTAATATGTCTAATCTGGGAAGTCACACAACTGCACAGGCTGCCACTATTGACTCTCAGGCACAGCCACGGCCTTTCAGCAATAGCCTTGGGGGCACTCTGATGGGGGTTATAAGGGGCTCAGGAAGAGGGGTTGTTAAATCAGATACTTCTTATTCTGGCTCCATGTCTGCCACACCATCCACGTCAGCTTCATCTTCAGCAAATGTTGAGGCACAATCATTTGCTACTCCCTTCAAAACAGACGTCTCTTCCTTGGGTTCATACACACCATCTGTGTCTGTTGGAAGCGGAAGAAGAAGGTTTTCAGAAATGCCTCTTTCTGCTTCAACTCATAAGGAACAGTCGCAAACAACCTACAGGGATCGGGCAGCTGAGAGAAGAAGTTTGTATGGCTCGTCATCTTCAGTTGGCAATGATTTGGCTGATCTTGAAATTGGGGATTCAACTCGAGATTTTGCATCAAGGAGGGGTGATACAATGCCATTCCCTCCCGGAGTTGGTGGAGGACGCACAGTTGGAGATGTCAACCTTGATACTTTTGAGGTCATTACGGCAGACAAAGCGATTGATGAAAAGAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGCTTGGGACTAGGAAAAGATGGAAGTGGAATGATAGAGCCTGTTCAGACACAAGCCATGGAAAATAGAGCAGGGCTCGGAAGTCAGCAGAAAAAGTTAGACCCTAGCCTCGAGGTGCAGGCCAACGATAGCTACAAGATGCTTATTCATAAAAAAGCACTTGCTAGGTTTCGCGAAATGTAA 3192 0.4514 MDPGRYALHQGWDNNSALEGYGAVHDPNFRVGGSYDERRFIDERYPRDAVYQRNNFHRDVLEREAYLPPGPAVGQWSQSKRRGYDEDHPLDRESRRFQRPYHEPYNQMDGFRDREIDMYPEYDKFRDGYTNIENYGDRGYDKPARFAGHDRDDYAYDDYGHKSRVSHHRREDSHDRDYEHGRHSYDSDYEKDSRRDSSWRRRESRDRERDKRCLSREKDPSPHRKHERSRSRSRSHSRSRSHSRSHSHSRSRSQSRGYDDHPKSRSPRGRSHSRSYREDSYGDNRYDRSERRRDRDDKHQREHFSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAARGMMDKLGDDGLVVDGRKLFFEYSSKPTGGAGPDGALRPGHSHKGITIPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISLSNSTSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQSNGPEQTSTDVGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKSSNNESEPSKSSDGLSTKKVVISAPATIVTSNEKPASLADAVQAAAAAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQTTRVALEDNQLSGSADDRPYSSAHSAKNKLKNDASSREINMSNLGSHTTAQAATIDSQAQPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSMSATPSTSASSSANVEAQSFATPFKTDVSSLGSYTPSVSVGSGRRRFSEMPLSASTHKEQSQTTYRDRAAERRSLYGSSSSVGNDLADLEIGDSTRDFASRRGDTMPFPPGVGGGRTVGDVNLDTFEVITADKAIDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQANDSYKMLIHKKALARFREM 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01864 1063 ProSitePatterns Zinc finger RanBP2-type signature. 416 435 IPR001876 -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 227 251 - -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 252 304 - -
Trre16g01864 1063 SMART zf_4 414 438 IPR001876 -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 80 109 - -
Trre16g01864 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 467 547 IPR000504 GO:0003723
Trre16g01864 1063 MobiDBLite consensus disorder prediction 843 864 - -
Trre16g01864 1063 SMART G-patch_5 986 1032 IPR000467 GO:0003676
Trre16g01864 1063 ProSiteProfiles Zinc finger RanBP2 type profile. 412 441 IPR001876 -
Trre16g01864 1063 CDD OCRE_SUA_like 606 658 IPR035623 -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 163 304 - -
Trre16g01864 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 371 IPR000504 GO:0003723
Trre16g01864 1063 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 469 534 IPR000504 GO:0003723
Trre16g01864 1063 Gene3D - 274 410 IPR012677 -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 163 226 - -
Trre16g01864 1063 Gene3D - 412 442 - -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 585 609 - -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 67 109 - -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 752 792 - -
Trre16g01864 1063 SUPERFAMILY RNA-binding domain, RBD 465 552 IPR035979 GO:0003676
Trre16g01864 1063 CDD RRM1_RRM2_RBM5_like 465 545 - -
Trre16g01864 1063 ProSiteProfiles G-patch domain profile. 988 1034 IPR000467 GO:0003676
Trre16g01864 1063 Pfam G-patch domain 989 1030 IPR000467 GO:0003676
Trre16g01864 1063 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 390 IPR000504 GO:0003723
Trre16g01864 1063 PANTHER RNA-BINDING PROTEIN 199 1061 - -
Trre16g01864 1063 Pfam OCRE domain 609 657 IPR041591 -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 594 608 - -
Trre16g01864 1063 MobiDBLite consensus disorder prediction 658 682 - -
Trre16g01864 1063 SMART rrm1_1 468 543 IPR000504 GO:0003723
Trre16g01864 1063 SMART rrm1_1 311 386 IPR000504 GO:0003723
Trre16g01864 1063 SUPERFAMILY Ran binding protein zinc finger-like 409 442 IPR036443 -
Trre16g01864 1063 SUPERFAMILY RNA-binding domain, RBD 227 388 IPR035979 GO:0003676
Trre16g01864 1063 Gene3D - 448 572 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01864 Trre-Chr16 14796247 14803325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01864 309 531 Eukaryotic Initiation Factors Gene Family AT2G36660 25.896 5.84e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01864 K13094 - gmx:100777686 1666.74