Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01861 ATGAGTAGCACTTCAAGTGGCGATGATGGCCGCAAAACGCTAAAGTGTAATCAGATGTCATTGTCAAGTGGGGATGATGATAGTCGCAAAATGCTAAAGCGTAATCGGCCATCATCATCAAGCGGTGATGTTGGCTGCAAAAGGATAAAGCGTAGTCAGTCGTCATTATTAGGCGAAGGTGATCAAGGACGTAACGCGGAAGGAGGAGAAGGTATATCTATTGGAGATGATGGTCACAAAACGCTAAAGCGTAGTTGGTCATCGTTATCAATTGAGGACGATAGTCACAAAATGCTAAAGCGTAATTGGCCATCATCATCAAGTGGAGATGATGACTCCAAACGGATAAAGCGTAGCGAGTCATCATTATCAGGTGAGGAAGATGATGATGATGATGAAGAAGATGATCAAGGAGGTAACTCGGGAGGAGCAGGAGAAGAAGGTAGTCTTAAAAAAGGTACATGGACAGCAGAAGAGGATGAAATTTTGGTAGAACATGTTAAAAAATACGGATTGGGAAATTGGAATGCGGTGCGAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCTAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTCCACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGGTAAACAAGAAAATGCCGACACAAATGAAGCCGGCCAGTGTGATGAAACAGAAAACTTCATTATACCTGATGTGGAATTTAAAGATTACAAATTACACCCAGCTATGTTACCACCGTGTTTTGATATTACTACCTTGATCAAGCGTCCCTCAAAGCGCGCTTGTGAGTCCAATATGATATACAGTGATTTGGGCGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTGTTTGATCTGTATGGCAAATATCCCATGTTTTCTGCTCCATGTGATCCAATTCTTTACACCAACGCTCCATTTCATGGATATGAATCATATGATAACATTCCGGACGGTATTCACACTGTACCAAATGTCTATGAATCATATGATAACATCCCGGACGGTATTCACACCGTACCAAATGTCTCTTCGTCTGAGCCCATATACGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACTTCACTTGAGTCTGTCGAGACAATGATTCACTCTTCTCCTAATGAGCCTTATCAGTCATCTCCGAATGAGCCTTATCAGTCAGTTCCAACTTCGCCAGATAGCAGTCATTTCGTTGATACAATATTACACTCCAATGATGATTCTTTTCAAGAGAAAATTGATAACACCGCGCCAAATGAAGCAGACAATAGCACACAGTGGAATGTACTAGATGATCAGTCTGGTGCTTCATTTCTGCCATTTGACTATAATACTCATCACATGAACATGTGGTCTATTGATCGATCCGACTTGGTCGATACCACTCAAGATCATGGTAATTTGAATCAAATAGATTTTGCCTCAGATCCTATGCTTGAATCCGGTTGGTGCATGAAGAGTAAATGA 1707 0.4224 MSSTSSGDDGRKTLKCNQMSLSSGDDDSRKMLKRNRPSSSSGDVGCKRIKRSQSSLLGEGDQGRNAEGGEGISIGDDGHKTLKRSWSSLSIEDDSHKMLKRNWPSSSSGDDDSKRIKRSESSLSGEEDDDDDEEDDQGGNSGGAGEEGSLKKGTWTAEEDEILVEHVKKYGLGNWNAVRKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKGKQENADTNEAGQCDETENFIIPDVEFKDYKLHPAMLPPCFDITTLIKRPSKRACESNMIYSDLGGCSSSAAVQEVFDLYGKYPMFSAPCDPILYTNAPFHGYESYDNIPDGIHTVPNVYESYDNIPDGIHTVPNVSSSEPIYGSMRYELPSLQYLQTQQGSWSVSPLTSLESVETMIHSSPNEPYQSSPNEPYQSVPTSPDSSHFVDTILHSNDDSFQEKIDNTAPNEADNSTQWNVLDDQSGASFLPFDYNTHHMNMWSIDRSDLVDTTQDHGNLNQIDFASDPMLESGWCMKSK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01861 568 CDD SANT 207 248 IPR001005 -
Trre16g01861 568 CDD SANT 154 199 IPR001005 -
Trre16g01861 568 MobiDBLite consensus disorder prediction 448 474 - -
Trre16g01861 568 Gene3D - 207 253 - -
Trre16g01861 568 MobiDBLite consensus disorder prediction 107 124 - -
Trre16g01861 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 203 IPR017930 -
Trre16g01861 568 ProSiteProfiles Myb-like domain profile. 200 250 IPR001005 -
Trre16g01861 568 Pfam Myb-like DNA-binding domain 205 248 IPR001005 -
Trre16g01861 568 Pfam Myb-like DNA-binding domain 152 199 IPR001005 -
Trre16g01861 568 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 254 IPR017930 -
Trre16g01861 568 MobiDBLite consensus disorder prediction 1 154 - -
Trre16g01861 568 FunFam MYB-related transcription factor 151 204 - -
Trre16g01861 568 Gene3D - 149 205 - -
Trre16g01861 568 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 130 539 - -
Trre16g01861 568 SMART sant 151 201 IPR001005 -
Trre16g01861 568 SMART sant 204 252 IPR001005 -
Trre16g01861 568 SUPERFAMILY Homeodomain-like 150 246 IPR009057 -
Trre16g01861 568 ProSiteProfiles Myb-like domain profile. 147 199 IPR001005 -
Trre16g01861 568 MobiDBLite consensus disorder prediction 125 140 - -
Trre16g01861 568 MobiDBLite consensus disorder prediction 1 25 - -
Trre16g01861 568 MobiDBLite consensus disorder prediction 73 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01861 Trre-Chr16 14761251 14763244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01861 135 453 MYB Transcription Factor Family AT5G06100 41.061 7.05e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g01861 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01861 K09422 - gmx:100800658 350.132