Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01860 ATGTCATTGTCAAGTGGAGATGATGATAGTCGCAAAATGCTAAAGCGTAATCGGCCATCATCATCAAGCGGTGATGTTGGCTGCAAAAGGATAAAGCGTAGTCAGTCGTCATTATTAGGCGAAGAAGATGATCAAGGACGTAACGCGGAAGGAGGAGAAGGTATATCTATTGGAGATGATGGTCACAAAACGCTAAAGCGTAGTTGGTCATCGTTATCAATTGAGGACGATAGTCACAAAATGCTAAAGCGTAATTGGCCATCATCATCAAGTGGGGATGATGACTCCAAACGGATAAAGCGTAGCGAGTCATCATTATCAGGTGAGGAAGATGATGATGATGATGAAGAAGATGATCAAGGAGGTAACTCGGGAGGAGCAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACAGCAGAAGAGGATGAAATTTTGGTAGAACATGTTAAAAAATACGGATTGGGAAATTGGAATGCGGTGCGAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCTAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTCCACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGGTAAACAAGAAAATGCCGACACAAATGAAGCCGGCCAGTGTGATGAAACAGAAAACTTCATTATACCTGATGTGGAATTTAAAGATTACAAATTACACCCAGCTATGTTACCACCGTGTTTTGATATTACTACCTTGATCAAGCGTCCCTCAAAGTGCGCTTGTGAGTCCAATATGATATACAGTGATTTGGGCGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTGTTTGATCTGTATGGCAAATATCCCATGTTTTCTGCTCCATGTGATCCAATTCTTTACACCAACGCTCCATTTCATGGATATGAATCATATGATAACATTCCGGATGGTATTCACACTGTACCAAATGTCTATGAATCATATGATAACATTCCGGACGGTATTCACACCGTACCAAATGTCTCTTCGTCTGACGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACTTCACTTGAGTCTGTCGAGACAATGATTCACTCTTCTCCTAATGAGCCTTATCAGTCATCTCCGAATGAGCCTTATCAGTCAGTTCCAACTTCGCCAGATAGCAGTCATTTCGTTGATACAATATTACACTCCAATGATGATTCTTTTCAAGAGAAAATTGATAACACCGCGCCAAATGAAGCAGACAATAGCACACAGTGGAATGTACTAGATGATCAGTCTGGTGCTTCATTTCTGCCATCTGACTATAATACTCATCACATGAACATGTGGTCTATTGATCGATCCGACTTGGTCGATACCACTCAAGATCATGGTAATTTGAATCAAATAGATTTTGCCTCAGATCCTATGCTTGAATCCGGTTGGTGCATGAAGAATAAATGA 1647 0.4189 MSLSSGDDDSRKMLKRNRPSSSSGDVGCKRIKRSQSSLLGEEDDQGRNAEGGEGISIGDDGHKTLKRSWSSLSIEDDSHKMLKRNWPSSSSGDDDSKRIKRSESSLSGEEDDDDDEEDDQGGNSGGAGEEGSLKKGTWTAEEDEILVEHVKKYGLGNWNAVRKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKGKQENADTNEAGQCDETENFIIPDVEFKDYKLHPAMLPPCFDITTLIKRPSKCACESNMIYSDLGGCSSSAAVQEVFDLYGKYPMFSAPCDPILYTNAPFHGYESYDNIPDGIHTVPNVYESYDNIPDGIHTVPNVSSSDGSMRYELPSLQYLQTQQGSWSVSPLTSLESVETMIHSSPNEPYQSSPNEPYQSVPTSPDSSHFVDTILHSNDDSFQEKIDNTAPNEADNSTQWNVLDDQSGASFLPSDYNTHHMNMWSIDRSDLVDTTQDHGNLNQIDFASDPMLESGWCMKNK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01860 548 CDD SANT 137 182 IPR001005 -
Trre16g01860 548 MobiDBLite consensus disorder prediction 90 107 - -
Trre16g01860 548 FunFam MYB-related transcription factor 134 187 - -
Trre16g01860 548 MobiDBLite consensus disorder prediction 428 454 - -
Trre16g01860 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 186 IPR017930 -
Trre16g01860 548 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Trre16g01860 548 MobiDBLite consensus disorder prediction 108 123 - -
Trre16g01860 548 MobiDBLite consensus disorder prediction 1 137 - -
Trre16g01860 548 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 113 525 - -
Trre16g01860 548 SMART sant 134 184 IPR001005 -
Trre16g01860 548 SMART sant 187 235 IPR001005 -
Trre16g01860 548 MobiDBLite consensus disorder prediction 35 49 - -
Trre16g01860 548 MobiDBLite consensus disorder prediction 56 83 - -
Trre16g01860 548 Gene3D - 190 236 - -
Trre16g01860 548 ProSiteProfiles Myb-like domain profile. 130 182 IPR001005 -
Trre16g01860 548 CDD SANT 190 231 IPR001005 -
Trre16g01860 548 Pfam Myb-like DNA-binding domain 188 231 IPR001005 -
Trre16g01860 548 Pfam Myb-like DNA-binding domain 135 182 IPR001005 -
Trre16g01860 548 SUPERFAMILY Homeodomain-like 133 229 IPR009057 -
Trre16g01860 548 Gene3D - 132 188 - -
Trre16g01860 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 237 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01860 Trre-Chr16 14751599 14753532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01860 118 433 MYB Transcription Factor Family AT5G06100 41.127 6.52e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g01860 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01860 K09422 - gmx:100800658 337.035