Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01859 ATGAGTAGCACTTCAAGTGGCGATGATGGCCGCAAAACGCTTAAGTGTAATCAGATGTCATTGTCAAGTGGAGATGATGATAGTCGCAAAATGCTAAAGCGTAATCGGCCATCATCATCAAGCGGTGATGTTGGCTGCAAAAGGATAAAGCGTAGTCAGTCGTCATTATTAGGCGAAGAAGATGATCAAGGACGTAACGCGGAAGGAGGAGAAGGTATATCTATTGGAGATGATGGTCACAAAACGCTAAAGCGTAGTTGGTCATCGTTATCAATTGAGGACGATAGTCACAAAATGCTAAAGCGTAATTGGCCATCATCATCAAGTGGGGATGATGACTCCAAACGGATAAAGCGTAGCGAGTCATCATTATCAGGTGAGGAAGATGATGATGATGATGAAGAAGATGATCAAGGAGGTAACTCGGGAGGAGCAGGAGAAGAAGGTAGTCTTAAGAAAGGTACATGGACAGCAGAAGAGGATGAAATTTTGGTAGAACATGTTAAAAAATACGGATTGGGAAATTGGAATGCGGTGCGAAAGTATTCAGGACTTGCTCGCTGTGGGAAAAGCTGTCGTCTACGATGGGCTAATCATTTGAGACCAGAACTGAAAAAGGGTGAATTTACTGATGAAGAAAAAAAGAAAGTCCTTGAGCTCCACTTTTCGATGGGAAACAAATGGGCTCGAATGGCTGCATTGATGCCTGGGCGTACAGATAATGAGATAAAGAACTATTGGAACACGAGAGCTAAGAGACTACGACGAGTTGGCTTACCACTCTACCCTGAAGAGATATCCAAAAATCCGTTAAAGGGTAAACAAGAAAATGCCGACACAAATGAAGCCGGCCAGTGTGATGAAACAGAAAACTTCATTATACCTGATGTGGAATTTAAAGATTACAAATTACACCCAGCTATGTTACCACCGTGTTTTGATATTACTACCTTGATCAAGCGTCCCTCAAAGTGCGCTTGTGAGTCCAATATGATATACAGTGATTTGGGCGGTTGTAGCAGTAGTGCTGCTGTCCAAGAAGTGTTTGATCTGTATGGCAAATATCCCATGTTTTCTGCTCCATGTGATCCAATTCTTTACACCAACGCTCCATTTCATGGATATGAATCATATGATAACATTCCGGATGGTATTCACACTGTACCAAATGTCTATGAATCATATGATAACATTCCGGACGGTATTCACACCGTACCAAATGTCTCTTCGTCTGACGGGTCCATGAGGTATGAGCTCCCTTCACTCCAATATTTACAGACTCAACAAGGTAGCTGGTCTGTGTCGCCACTTACTTCACTTGAGTCTGTCGAGACAATGATTCACTCTTCTCCTAATGAGCCTTATCAGTCATCTCCGAATGAGCCTTATCAGTCAGTTCCAACTTCGCCAGATAGCAGTCATTTCGTTGATACAATATTACACTCCAATGATGATTCTTTTCAAGAGAAAATTGATAACACCGCGCCAAATGAAGCAGACAATAGCACACAGTGGAATGTACTAGATGATCAGTCTGGTGCTTCATTTCTGCCATCTGACTATAATACTCATCACATGAACATGTGGTCTATTGATCGATCCGACTTGGTCGATACCACTCAAGATCATGGTAATTTGAATCAAATAGATTTTGCCTCAGATCCTATGCTTGAATCCGGTTGGTGCATGAAGAATAAATGA 1701 0.4203 MSSTSSGDDGRKTLKCNQMSLSSGDDDSRKMLKRNRPSSSSGDVGCKRIKRSQSSLLGEEDDQGRNAEGGEGISIGDDGHKTLKRSWSSLSIEDDSHKMLKRNWPSSSSGDDDSKRIKRSESSLSGEEDDDDDEEDDQGGNSGGAGEEGSLKKGTWTAEEDEILVEHVKKYGLGNWNAVRKYSGLARCGKSCRLRWANHLRPELKKGEFTDEEKKKVLELHFSMGNKWARMAALMPGRTDNEIKNYWNTRAKRLRRVGLPLYPEEISKNPLKGKQENADTNEAGQCDETENFIIPDVEFKDYKLHPAMLPPCFDITTLIKRPSKCACESNMIYSDLGGCSSSAAVQEVFDLYGKYPMFSAPCDPILYTNAPFHGYESYDNIPDGIHTVPNVYESYDNIPDGIHTVPNVSSSDGSMRYELPSLQYLQTQQGSWSVSPLTSLESVETMIHSSPNEPYQSSPNEPYQSVPTSPDSSHFVDTILHSNDDSFQEKIDNTAPNEADNSTQWNVLDDQSGASFLPSDYNTHHMNMWSIDRSDLVDTTQDHGNLNQIDFASDPMLESGWCMKNK 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01859 566 ProSiteProfiles Myb-like domain profile. 201 251 IPR001005 -
Trre16g01859 566 FunFam MYB-related transcription factor 152 205 - -
Trre16g01859 566 MobiDBLite consensus disorder prediction 53 67 - -
Trre16g01859 566 ProSiteProfiles Myb-like domain profile. 148 200 IPR001005 -
Trre16g01859 566 MobiDBLite consensus disorder prediction 1 155 - -
Trre16g01859 566 MobiDBLite consensus disorder prediction 74 101 - -
Trre16g01859 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 255 IPR017930 -
Trre16g01859 566 SUPERFAMILY Homeodomain-like 151 247 IPR009057 -
Trre16g01859 566 CDD SANT 208 249 IPR001005 -
Trre16g01859 566 Pfam Myb-like DNA-binding domain 206 249 IPR001005 -
Trre16g01859 566 Pfam Myb-like DNA-binding domain 153 200 IPR001005 -
Trre16g01859 566 CDD SANT 155 200 IPR001005 -
Trre16g01859 566 SMART sant 152 202 IPR001005 -
Trre16g01859 566 SMART sant 205 253 IPR001005 -
Trre16g01859 566 Gene3D - 208 254 - -
Trre16g01859 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 150 204 IPR017930 -
Trre16g01859 566 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 131 543 - -
Trre16g01859 566 MobiDBLite consensus disorder prediction 126 141 - -
Trre16g01859 566 MobiDBLite consensus disorder prediction 108 125 - -
Trre16g01859 566 Gene3D - 150 206 - -
Trre16g01859 566 MobiDBLite consensus disorder prediction 446 472 - -
Trre16g01859 566 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01859 Trre-Chr16 14751545 14753532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01859 136 451 MYB Transcription Factor Family AT5G06100 41.127 7.98e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g01859 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01859 K09422 - gmx:100800658 337.035