Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01850 ATGTTTACATGCATAGCTTGTACGAAACAAACGTCAGATGAGAGGGATGAAGATGGCCGTGAGAGTGGCACGCCTAATACTAAAGAAGCCGTCAAAAGCCTCACTACTCAGATAAAGGATATGGCGCTAAAGTTTTCAGGTGCTTACAAGCAATGCAAACCCTGCACAGGCGGATCAAGTAGCTACAACAAGAAAGGACATAGACCATATCCAGATTTTGACACAATTTCAGAAGGTGTTCCATACCCTTATATTGGAGGTGCAAGTTCAAGTTCAACCCCTGCATGGGACTTCACTACTTCTAACTACCCGGGCGCAAGATATGCCGGAGACCGGACCCCTAGAGGACGCGACTCTGCATCCGTCTGTGATGTAGTGTTGGAGGACGAGGATGAACCTAAGGAATGGATGGCACAGGTTGAGCCAGGGGTTCATATTACCTTTGTTTCTCTTCCTAATGGTGGAAATGATCTCAAGAGAATTCGTTTCAGCCGTGAGATGTTCAATAAATGGCAAGCTCAAAAATGGTGGGGCGAGAATTACGACAGAATCATGGAACTTTACAATGTCCAACGATTTAATAGACAAGCTCTCAACACTCCTCCAAGGTCTGAGGCCGACGAGCAAAGAGATTCTACTTACTCAAGATTGACATCAGCAAGAGAAAGTCCTATGGCATCAGTTAAGGATTGGACACCAAGAAGTCACTACAAACCATCTGGACAGTTGGATCAAGGCGGAGGCCACCACTTTCAAGCAGGGTCATCGATAGAACCATCAAGGGCAACCACATCATCTAGAGATGAACCTTCTATTAGCAATGCAAGTGAAATGGAGTCAGAATGGGTAGAACAAGATGAGCCTGGAGTTTACATTACAATCAGACAGTTAGCTGATGGTACTAGGGAACTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGCGAGGTAAATGCAAAAACATGGTGGGAAGAGAACAGAGAAAGAATACAATCTCAATACCTTTGA 1008 0.4504 MFTCIACTKQTSDERDEDGRESGTPNTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGGSSSYNKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSNYPGARYAGDRTPRGRDSASVCDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNVQRFNRQALNTPPRSEADEQRDSTYSRLTSARESPMASVKDWTPRSHYKPSGQLDQGGGHHFQAGSSIEPSRATTSSRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQSQYL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01850 335 ProSiteProfiles BRX domain profile. 280 335 IPR013591 -
Trre16g01850 335 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 335 IPR044532 -
Trre16g01850 335 ProSiteProfiles BRX domain profile. 134 189 IPR013591 -
Trre16g01850 335 MobiDBLite consensus disorder prediction 10 30 - -
Trre16g01850 335 MobiDBLite consensus disorder prediction 256 279 - -
Trre16g01850 335 MobiDBLite consensus disorder prediction 198 284 - -
Trre16g01850 335 Pfam Transcription factor regulating root and shoot growth via Pin3 279 334 IPR013591 -
Trre16g01850 335 Pfam Transcription factor regulating root and shoot growth via Pin3 134 188 IPR013591 -
Trre16g01850 335 Pfam Transcription factor BRX N-terminal domain 22 55 IPR027988 -
Trre16g01850 335 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01850 Trre-Chr16 14668006 14673466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01850 1 335 Major Intrinsic Protein MIP AT1G31880 68.169 8.66e-167 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01850 - - ccaj:109789470 597.43