Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01847 ATGGATTTCACCACAAATCTCAACGACCTTCCACCCAACAAGAGAAAAATCAAACTCATTCAACAGCAACAACAACAACAACAACAACACTCTCTCTTGTTACCCACAAAAAAACGTAAAGAATCTCGAAACACATCACTTTTTAACAACCCACCATCAACATCTATCTATTCTCTACCCACCAAAAAAAGAGTCTGCGCCCTTCAACCTCACCTTTACCAAAGCGATGTTGTTCAACATATCGATCTCAATGTCGAATACAACCCTGCTCTTCACTCACCAACTCTAACCGAGAAACAAACTCCAAAACAGGACATCAACAATGACCAACATGGTGCTGCTGATGATACTGATGATGATGGGATTTTATGCTGTGTGTGCCAGAGCACAGATGCTAACCCTGAGGATCCAATTGTTTTCTGTGACGGTTGCAATTTAATGGTCCATGCTTCCTGTTATGGAAATCCATTATCAAAACAAATCCCAGAAGGGGATTGGTTTTGTGAACGGTGTCGTTTTATTAAAAACAACACCGATCTAATTTGTTGCTCCCTCTGTCCAAAAATAGAGGGAGCAATGAAACAAACAATAGATGGAAAGTGGGCACACTTGGTTTGTGCTTTACTTGTTCCTGAAGTGTTTTTTGTAGATCCAGAAGGAAGAGATGGGATTGATTGTTCCAAAGTTCCAAAGAAGAGGTGGTTGGAAAAATGCTATGTTTGTGATTGCTGTGATGGGTGTGCTTTGGTTTGTTCTGAACCTAAATGTGGTTTGGGTTTTCATATTACTTGTGGAATCAAAGAGGATCTTTGTATTGAGTATAAAGAAGGGAAAAAAGGTTCTACTGTTGTTGCTGGTTTTTGCAAATCTCACTCTCAACTCTGGGAAAAGCAACAGGTATCAGGGAAATACAAGATTGTTGCAGTTGAAGATAAAAAGTAG 942 0.396 MDFTTNLNDLPPNKRKIKLIQQQQQQQQQHSLLLPTKKRKESRNTSLFNNPPSTSIYSLPTKKRVCALQPHLYQSDVVQHIDLNVEYNPALHSPTLTEKQTPKQDINNDQHGAADDTDDDGILCCVCQSTDANPEDPIVFCDGCNLMVHASCYGNPLSKQIPEGDWFCERCRFIKNNTDLICCSLCPKIEGAMKQTIDGKWAHLVCALLVPEVFFVDPEGRDGIDCSKVPKKRWLEKCYVCDCCDGCALVCSEPKCGLGFHITCGIKEDLCIEYKEGKKGSTVVAGFCKSHSQLWEKQQVSGKYKIVAVEDKK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01847 313 Pfam PHD-finger 124 172 IPR019787 -
Trre16g01847 313 SUPERFAMILY FYVE/PHD zinc finger 110 174 IPR011011 -
Trre16g01847 313 PANTHER PHD FINGER PROTEINS 74 292 - -
Trre16g01847 313 SMART PHD_3 237 292 IPR001965 -
Trre16g01847 313 SMART PHD_3 123 172 IPR001965 -
Trre16g01847 313 Pfam PHD-zinc-finger like domain 183 291 - -
Trre16g01847 313 MobiDBLite consensus disorder prediction 21 54 - -
Trre16g01847 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 294 IPR013083 -
Trre16g01847 313 ProSiteProfiles Extended PHD (ePHD) domain profile. 180 292 IPR034732 -
Trre16g01847 313 ProSiteProfiles Zinc finger PHD-type profile. 121 174 IPR019787 -
Trre16g01847 313 MobiDBLite consensus disorder prediction 92 114 - -
Trre16g01847 313 CDD PHD_BRPF_JADE_like 123 171 - -
Trre16g01847 313 MobiDBLite consensus disorder prediction 92 108 - -
Trre16g01847 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01847 Trre-Chr16 14658258 14659386 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01847 14 313 C2H2 Transcription Factor Family AT3G14740 49.695 5.23e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre16g01847 zf-HC5HC2H_2 1.5e-23 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01847 K11380 - gmx:100802652 387.111