Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01842 ATGGGCAGTGATGCAATGCGAAGCAAAGAGTACTGTGCCCTGAAGGATTTACAATTGAATTTTAATGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATTTGATCAATTCTACTACATTTCCTGCTATCATTCTTCATCAGATTCACTCTGACATCTCCGAAAGTGGTCCTTTTCTCGTTATTAACGATAATAAGAGAATCAATGTTTTACCAGTTCTTTACTTACACCAAGAAGCTCCTGTTACTTGCTCCGATCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTTGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAGATTATATTCGGCTTCAAATTAATGGGGACATTGTAGGAGAAAAGTCACTGTCGGAATCCAAATCAAGAAATTTGAAGGATTTACATTTGGCGAATCGTTGTGGAGACATAAGTGGTGTGCAGGGTTATGTCCACAATTATGAAGGATTCCATGCTGTTTCTTCTATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCGATAGATGAATCATCTGTCTCTGAGGTTGAAGAGGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGCAAAGCATCTTGTCGCAGAAATTTCTCTTTAGACATTGTTTTATCAGATGCATTTGGACAACTTGTAGATAGGGAGGATGAGGTTTTTGCTTCACTTGTGTATGCTGACACGGGGGCTCCAGTGGAGAATACAAGTGATGGCGAAGCACCCCTTTTGTCTATCTATGATGGAATTGAATTTTCTTCCTTTGAAAGATCTAGCAAGTTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTTTGTTCCAAAATTAGGAAATTATCCTTTCCTTCAGACAAACACCCGTCCAATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACTTTGGTGTGGAAAAAGTCAACCTATGCTCTCCAAAGACTCAATTTGTCACAATCTTCCGCAATTGGTGATGTGTCATTGGAACATGCGAATTCTGGTCATGTAGAAAAAACCAATCCACTGATGAAGCGGTTTAGAGTTGGATTTGACAAGATATCTGTATCAGTTAAGGCCGACCCCCCCTCCTTAAAGCAACCTGGTGTCGAATGTAATTCTCATGTATGGCCTGCTAATCAGGTTGATAATGGGTTTCCGACAAGCATGGATGGAAGATCTCTTAACGTTGAAGAAGCAGATGACGCTCCATCTGAATCATCAGAGAGTATAGAGGAGAGAAATTCACCTTCAAACAGTATGGAATGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGGCAGGATTGGCTGAGAGATCTCAGATGCTTAAAGAAATTGCCACATTTGCTTCTGACAAAGAAATTTCAGAGTTGGCTCATGATGTTTCACACTATTCAGGATGTTCCCACCTTGGAAACCAAATATTAATTGCCAAAAGATTGATAGAGGATGGAACTAATCTTTGGTTGGCAATGTCTCCAAGCAATCACCCTGTTCCTTGGGAGAGTGCAGTGTATGAAATTGAAGAACAATTCATGAAGATTGCTTCTTGTGGGTCAAGATCTCTCTCTAATCAGGACTTTGAGACTCTAAGAAAGATTGCTGGATGTCAAGAATATTTAACACAAGAAAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCTTGTGTAATATCCAACGACTGTGTAAATCCTATCTGGAATTCCATTTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAAGCAGAAGCTTCACTTCAAGGTCCGACAGGATTTCAAGAACCTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCCGGTAGCCTAATTGTTACTTATGTTGGTAGTGACTACAAACTGCGCCACAGACTACTTTCAACGGATCATATATATGGCTCTGATAATCAAAGAATGGATGTAAAGCCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCTCGGTTGGGAAGGTAA 2115 0.4043 MGSDAMRSKEYCALKDLQLNFNEYDGTFSFCFWIYLINSTTFPAIILHQIHSDISESGPFLVINDNKRINVLPVLYLHQEAPVTCSDPWTEVPHVTVDFEFPFEKWVHVGCEVCPDYIRLQINGDIVGEKSLSESKSRNLKDLHLANRCGDISGVQGYVHNYEGFHAVSSIKDHHLKDPPLKLSIDESSVSEVEEESDGVWGIVGGKASCRRNFSLDIVLSDAFGQLVDREDEVFASLVYADTGAPVENTSDGEAPLLSIYDGIEFSSFERSSKFLLGRASFKLRISQLSSKCDNRLFLIRFFVPKLGNYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALQRLNLSQSSAIGDVSLEHANSGHVEKTNPLMKRFRVGFDKISVSVKADPPSLKQPGVECNSHVWPANQVDNGFPTSMDGRSLNVEEADDAPSESSESIEERNSPSNSMECRRYPISDMTIFKYCLAGLAERSQMLKEIATFASDKEISELAHDVSHYSGCSHLGNQILIAKRLIEDGTNLWLAMSPSNHPVPWESAVYEIEEQFMKIASCGSRSLSNQDFETLRKIAGCQEYLTQENFEKLWCWLYPVACVISNDCVNPIWNSISPKWIEGFITKEEAEASLQGPTGFQEPGTFILRFPTSRSWPHPDAGSLIVTYVGSDYKLRHRLLSTDHIYGSDNQRMDVKPLQDMLLAEPELSRLGR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01842 704 Gene3D SH2 domain 598 702 IPR036860 -
Trre16g01842 704 MobiDBLite consensus disorder prediction 412 452 - -
Trre16g01842 704 ProSiteProfiles Src homology 2 (SH2) domain profile. 611 668 IPR000980 -
Trre16g01842 704 SUPERFAMILY SH2 domain 606 682 IPR036860 -
Trre16g01842 704 CDD SH2_SHA 600 704 - -
Trre16g01842 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 145 IPR013320 -
Trre16g01842 704 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 16 700 IPR001217 GO:0003700|GO:0006355|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01842 Trre-Chr16 14635227 14644107 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Trre16g01842 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01842 - - cam:101502730 1116.68