Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01831 ATGACTTGTTTTGCTTTCTTATTTGGTAAGAAAGTGTCTTCTGATGTAAGACGAGATCCTGAAATCATCGAAGGACTTTCCGGCATTCGAATAAAAGTTTATACTTACAAAGAACTAAAAGTTGCCTCTGACAATTTCAGCCTGGCTAATAAAATCGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGAGTGCTAAAAGGTGGGAAGTTAGCCGCTATAAAAGTGCTTTCAACTGAATCAAAACAGGGGGTGAAGGAATTCTTGACCGAGATTAATGTGATTTCAGAAATACAGCATGAAAATTTGGTTATACTATATGGCTGTTGTGTGGAAGGAGATCACCGAATATTAGTTTACAATTACCTTGAGAACAATAGCCTTGCACAAACCCTTCTAGCTGGAGGTCACAGTAATATCTACTTCGATTGGCAAACACGATGTAGGATATGTATTGGAGTTGCACGTGGACTTGCTTTTCTTCACGAGGAAGTACAACCCCATATTGTTCACAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGATCTCACGCCTAAGATTTCAGATTTTGGTCTTGCAAAACTTATTCCATCATACATGACTCATGTCAGCACACGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAATTGACACGTAAAGCAGATATTTACAGTTTTGGGGTCCTCCTTGTAGAGATAGTCAGTGGGAGATCCAACACAAATACAAGATTACCAATTGCAGATCAATATATTCTAGAAACGACATGGGAACTTTATGAGCGAAAGGAATTGGTACAGTTGGTAGACATATCACTAAACGGGGGATTTGATGCTGAGGAGGCTTGTAAAATTCTGAAGATTGCACTTCTTTGTACTCAGGATACTCCTAAGCTTCGGCCAACCATGTCTTCTGTCGTCAAAATGCTCACCGGAGAAATTAGTGTTGATGAAAGTAAGATAACAAAACCAGGCTTGATTTCAGATGTCATGGACCTTAAAATTAGACAACCCAAAAAACTTAAAGATACCGAGACTACATATTCATACAATGCTTCGTCTGGCTCAGATAGCCAGGGTAATACTACCATATCATTGGCTGCTTCAAGTTCTGCAACAACTTCAAGCTTTACTGTATAA 1161 0.3945 MTCFAFLFGKKVSSDVRRDPEIIEGLSGIRIKVYTYKELKVASDNFSLANKIGEGGFGSVYKGVLKGGKLAAIKVLSTESKQGVKEFLTEINVISEIQHENLVILYGCCVEGDHRILVYNYLENNSLAQTLLAGGHSNIYFDWQTRCRICIGVARGLAFLHEEVQPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVSGRSNTNTRLPIADQYILETTWELYERKELVQLVDISLNGGFDAEEACKILKIALLCTQDTPKLRPTMSSVVKMLTGEISVDESKITKPGLISDVMDLKIRQPKKLKDTETTYSYNASSGSDSQGNTTISLAASSSATTSSFTV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01831 386 FunFam cold-responsive protein kinase 1 18 121 - -
Trre16g01831 386 CDD STKc_IRAK 52 319 - -
Trre16g01831 386 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01831 386 FunFam cold-responsive protein kinase 1 122 333 - -
Trre16g01831 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Trre16g01831 386 Gene3D Transferase(Phosphotransferase) domain 1 122 331 - -
Trre16g01831 386 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Trre16g01831 386 Gene3D Phosphorylase Kinase; domain 1 20 121 - -
Trre16g01831 386 Pfam Protein kinase domain 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01831 386 SUPERFAMILY Protein kinase-like (PK-like) 28 317 IPR011009 -
Trre16g01831 386 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 358 - -
Trre16g01831 386 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01831 Trre-Chr16 14542100 14545465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01831 5 365 Receptor kinase-like Gene Family AT1G53440 50.959 6.94e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01831 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01831 - - lja:Lj3g3v0422690.3 577.785