Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01830 ATGCCCATGGACTCCCTTGTTGCCGATGTAGGTTCCTTGTCGCCCCCTCCTACGGTTGCTGTTTCCAATCTTCCAGATGCTCTTGTCTCTCTTCTTTCTCCATCTGAAGTCTCTAACCTCCAAAAGGAGTTCTCTAGTCCGTTAACCGAGGGAGGAGACAAGTCTTTTGGGATTAATAACTTCTCAGGACCTTTGCCATATGAACTTGGGAAGCTGGTAAAACTAGAACAACTTTACATGGATAGTTGTGGAATCAGTGGTCCAATTCCATTCACAATGGCAAGGCTTAAGAATTTGGCGACAGTATGGGCTTCAGACAATAAATTCACAGGTAGAATACCCGAATTCATAGGAAGTTGGTCTAAGCTTCATTCCTTAAAGTTTCAGGGTAATTCTTTTGAAAGTCCATTGCCCTCATCATTGTCCACTTTAACTTCTTTGACAGAATTGAGAATAAGCGGTCTATCAAATGGGAGCTCATCATTGGATGTAATAAGGAACATGAAGTCTATAAAAATCTTAGAATTGAGAAATAACAATATTTCTGGTTCAATTCCTTCCACCTTCGGAGAATTTCAAAATTTGACCCACCTGGACTTAAGTTTCAATAACCTTTCAGGACAAATTCCAGTATCAATTTTCAATTTGAAGTCGCTCTCTTTCCTGTTTCTTGGAAATAATTCACTTAGTGGCACTCTCCCTCATCAGAAAAGTTCACATCTTTATATAATAGACTTGTCATACAATGATCTATCAGGAGGCCTCCCCTCTTGGATCAACGAAAAAAATTTACAATTGAACATAGTTGCAAACCACTTGACAATAAAAAATTCAAATAGCAGAGGTTTGCCTACTGGGACGAACTGTCTCCAGAAAAATTTTCCGTGCAATCGATATGCTGCGAAATATTCTGACATTGCGATCAAGTGCGGTGGTCCCCAAATTAGAACTACAGATGGAATTGTGTATCAAACAGACAACGAGACACTTGGTTCGGCTACATACTTTGTTACCGATACAAATAGATGGGCCGTTAGCAATGTTGGAATATTTAATGGGAACAATTATCCTCAGTTGAAAAATGTTGGTCCTAATCAATTCACTGGTACCGTGAACTTCGAGCTTTTTCAAACAGCTCGAATCTCTGCATCATCGTTAAGATATTATGGGTTGGGGCTAGAAAATGGTTTTTACAACATTACCCTCCAATTTGCGGAAACATATATTCTTGATTCTACTACATGGAAAAGCCTCGGGCAACGAGTCTTTGATATTTATATTCAGGGGACTCTTGTTTTGAAGGATTTTAACATACAAAGAGAAGCTGGAGGTTTGTCTTACAAAGCTGTTCAAAAGCACTTTAGGTTTGAAGTAAAAGACAACTATCTTGAGGTCCATCTTTTTTGGGCCGGAAAAGGGACTTTCTGCATACCCAACAAAGGTACTTATGGACCCTTGATTCAAGCCATCAGTGCTACCTCAGATTCCGTACCTACTGTCAGCAATAAAGCGGGTCTAATCATTGGAATTATTGTGGGTGTCGGAATTGCTTTCTTTCTAGAAGTTTTTTCCATTTTCTTTATCATTCGGAGAAGAAAACTCTATGCTGACAATGATGATATTTTAGGCATTGATATGATGCCAAACACTTTCAGCTACCATGAGTTAAAAAATGCTACAAGTGACTTCAGTCGTGACAATAAACTTGGAGAGGGAGGTTTTGGACCTGTTTATAAGGGGAAACTTAATGATGGAAGATTTGTGGCAGTGAAACAATTATCTATAGGATCCCATCAAGGAAAGAGCCAGTTTATAGCCGAGATTGTTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGTAAAAGACTTCTTGTCTATGAATATTTAGAAAATAAGAGTCTTGATCATGCATTGTTTGGAAATGTTTTATTCCTCAGTTGGTCAACCCGGTATGATGTTTGTATGGGTGTTGCGAAAGGTTTGACATATTTACACGAGGAGTCACGACTCCGGATTGTGCACCGTGATGTGAAAGCTAGTAATATTCTACTCGACTCTGAGCTTGTACCAAAAATATCTGACTTTGGATTAGCCAAATTATATGACGATAAAAAAACACATATAAGCACCCATGTTGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGAGGACGCCTCACAGAGAAAGCAGATGTTTTTTCCTTTGGTATTGTAGCTCTTGAGTTAGTTAGTGGGAGGCCAAATTCTGATCCGAGTTTAGAAGAAGAGAAGATGTATCTTCTTGAATGGGTTTGGCACCTTCATGAAAAAAATTGCATAAATGATCTTATAGATCCTAGACTATCAGATTTCAACATGGAAGAAGCACAACGCCTTGTGGGAATAGCACTTTTGTGCACTCAAACATCGCCAACTTTACGACCATCAATGTCACGTGTGGTGGCAATGCTTTCTGGAGATATCGAAGTGAGCATTGTAACATCAAGGCCTGAATACTTGAGTGACTGGAAATTTGACGATATGAGCAACTTCATAACTGATATTTCAATGAACGGATTTGATACAAGTGATTACAGTTCAACAAGTACCAGCATTGTTGGTGGTGCATATATTCATTCACCAAATGATCCTTCTAAATCCATCCTTCATGAGACTCATAGAGATGGATGGTAG 2712 0.3912 MPMDSLVADVGSLSPPPTVAVSNLPDALVSLLSPSEVSNLQKEFSSPLTEGGDKSFGINNFSGPLPYELGKLVKLEQLYMDSCGISGPIPFTMARLKNLATVWASDNKFTGRIPEFIGSWSKLHSLKFQGNSFESPLPSSLSTLTSLTELRISGLSNGSSSLDVIRNMKSIKILELRNNNISGSIPSTFGEFQNLTHLDLSFNNLSGQIPVSIFNLKSLSFLFLGNNSLSGTLPHQKSSHLYIIDLSYNDLSGGLPSWINEKNLQLNIVANHLTIKNSNSRGLPTGTNCLQKNFPCNRYAAKYSDIAIKCGGPQIRTTDGIVYQTDNETLGSATYFVTDTNRWAVSNVGIFNGNNYPQLKNVGPNQFTGTVNFELFQTARISASSLRYYGLGLENGFYNITLQFAETYILDSTTWKSLGQRVFDIYIQGTLVLKDFNIQREAGGLSYKAVQKHFRFEVKDNYLEVHLFWAGKGTFCIPNKGTYGPLIQAISATSDSVPTVSNKAGLIIGIIVGVGIAFFLEVFSIFFIIRRRKLYADNDDILGIDMMPNTFSYHELKNATSDFSRDNKLGEGGFGPVYKGKLNDGRFVAVKQLSIGSHQGKSQFIAEIVTISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDHALFGNVLFLSWSTRYDVCMGVAKGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTHVAGTIGYLAPEYAMRGRLTEKADVFSFGIVALELVSGRPNSDPSLEEEKMYLLEWVWHLHEKNCINDLIDPRLSDFNMEEAQRLVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSIVTSRPEYLSDWKFDDMSNFITDISMNGFDTSDYSSTSTSIVGGAYIHSPNDPSKSILHETHRDGW 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01830 903 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 55 137 - -
Trre16g01830 903 Pfam Protein tyrosine and serine/threonine kinase 566 830 IPR001245 GO:0004672|GO:0006468
Trre16g01830 903 Pfam Malectin domain 305 490 IPR021720 -
Trre16g01830 903 FunFam Leucine-rich repeat receptor-like protein kinase 303 494 - -
Trre16g01830 903 Gene3D Ribonuclease Inhibitor 38 159 IPR032675 -
Trre16g01830 903 Gene3D Ribonuclease Inhibitor 160 289 IPR032675 -
Trre16g01830 903 Gene3D Phosphorylase Kinase; domain 1 537 638 - -
Trre16g01830 903 Gene3D - 305 496 - -
Trre16g01830 903 FunFam Putative LRR receptor-like serine/threonine-protein kinase 639 842 - -
Trre16g01830 903 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Trre16g01830 903 ProSiteProfiles Leucine-rich repeat profile. 194 216 IPR001611 GO:0005515
Trre16g01830 903 FunFam Putative LRR receptor-like serine/threonine-protein kinase 158 281 - -
Trre16g01830 903 FunFam Leucine-rich repeat receptor-like protein kinase 533 638 - -
Trre16g01830 903 ProSiteProfiles Protein kinase domain profile. 563 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01830 903 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 52 861 - -
Trre16g01830 903 SUPERFAMILY Protein kinase-like (PK-like) 544 830 IPR011009 -
Trre16g01830 903 SUPERFAMILY L domain-like 59 266 - -
Trre16g01830 903 Gene3D Transferase(Phosphotransferase) domain 1 639 841 - -
Trre16g01830 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 682 694 IPR008271 GO:0004672|GO:0006468
Trre16g01830 903 CDD STKc_IRAK 569 830 - -
Trre16g01830 903 SMART serkin_6 563 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01830 Trre-Chr16 14523318 14535110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01830 59 902 Receptor kinase-like Gene Family AT1G56120 58.617 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01830 PK_Tyr_Ser-Thr 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01830 - - mtr:25502389 1347.8