Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01826 ATGAACATCTTCCAAAAGCTCTTCCGAGCAATGAAGCCGCGGCGGAATAACACTCACCGCCGATCTGACTCAACAAAAGAGCCACTAACTGATTTTCCTCCAGAGCACAGTGATGTGCCTGAAGGTCATGTGCCAGTGTACGTTGGAGAGGAAATGGTCCGGTTCATTGTGACTGCTGAGCTGCTGAACCATCCGGTTTTTGTGAACCTGCTGAACATTTCGGCTCAAGAATATGGTTATCAAGGTGTGCTTCGAATTCCTTGCCGTGTTGTTGTGTTTGAGCGTGTTCTTGAAGCGATTCGACAAGGTCGTAGCTTGGGTGCAATTCATGAACTCCTCAAAGATGAGTGA 351 0.4786 MNIFQKLFRAMKPRRNNTHRRSDSTKEPLTDFPPEHSDVPEGHVPVYVGEEMVRFIVTAELLNHPVFVNLLNISAQEYGYQGVLRIPCRVVVFERVLEAIRQGRSLGAIHELLKDE 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01826 116 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 21 96 IPR003676 GO:0009733
Trre16g01826 116 Pfam Auxin responsive protein 20 99 IPR003676 GO:0009733
Trre16g01826 116 MobiDBLite consensus disorder prediction 17 38 - -
Trre16g01826 116 MobiDBLite consensus disorder prediction 14 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01826 Trre-Chr16 14483060 14483410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01826 20 101 Calmodulin-binding Proteins AT3G43120 39.286 7.54e-15 64.7