Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01818 ATGAAACACTGTATTTTGGGTTATGCACTTGTTATTGCTCTTTGTGTTTTAAGCTGTTTGGTTGACTTTTCACAAGCTCAAACTGCAAACGCCACTACAGATCCTTCTGAAGCAAGAGTTCTAAACTCAATATTCAGCAAATGGAGCATAAAAGCTGATCAAACTCAATGGAACATAAGCGGTGAGCTATGTAGTGGAAGAGCCATTGATAGCAGCAGCACCATCGATGACAACACCTTTAACCCATTCATCAAATGCGATTGTTCCTTTAACAACAAAACTACTTGCCGCATCACCGCACTGAAAGTTTATGCACGTGATGTGGTTGGTGAAATTCCACCAGAGCTATGGACTCTTGTTTATCTCACCAATTTGAACCTTGGCCAAAATTACTTGAAGGGGTCTCTACCTCCGGCAATTGCAAATCTGACTCGTATGCAATACATGTCCATTGGCATCAATGCTTTGTCAGGAGAGCTTCCAAAGGAGTTGGGAGATCTTACTCAGTTGATTGTATTGGGTTTTGGGTCTAATAACTTCTCGGGATCTTTGCCATCTGAACTTGGGAAGTTGGTAAAACTAGAACAACTCTACATGGATAGTTCTGGAATCAGTGGTCCAATTCCACCCACATTTACAAACCTAAATAATTTGGTGACAGTATGGGCTTCGGACACTGAACTCACAGGCAGAATACCCGACTTCATAGGAAATTGGTCTAAGCTTCAATCCTTGAGGTTTGAGGGTAATTCCTTTGAAGGTCCAATACCCTCATCATTTTCCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTCTATCTAATGGAAGCTCCTCATTGGAAATAATAAGGAATATGAAGTCTTTGACAACCTTAGAATTGAGGAATAACAATATTTCTGGTTCTATTCCTCCCACCTTAGGAGAACTTCAAAATTTGACCCAGCTGGACTTAAGCTTCAATAAAATCTCAGGACAAATTCCTGGATCAATTTTCAATTTGAGTGTGCTCTCTTCCTTGTTTCTTGGAAATAACACACTTAGCGGCACTCTGCCTCAGCAAAAAAGTTCATCTCTTAAAAATATAGACTTGTCATACAATGACCTATCTGGAAGCTTCCCCTCTTGGATAAACGAACCAAATTTACAACTGAACATAGTTGCCAACAACTTGACAATAGTAAATTCAAATATCGGTGGTTTGCCTACTGGGATCAACTGTCTCCAGAAAAGTTTTCCATGCAATCGTGGTGCTGCACGATATTCTGACTTTGCGATCAAGTGTGGTGGTCCCCAAATTACAGCTATAGATGGAACTGTGTATCAAACAGACAATGAGACACTTGGTCCTGCTACGTACTTTGTTACAGATACAAATAGATGGGCCGTTAGTAATGTTGGAATATTTACCGGGATCACCAATCCTCTGTTCAAAAGTTTTGTTTCTAATCAGTTCACTGGCACTGTGAACTCGGAGCTTTTTCAAACTGCTCGACTCTCTGCATCATCATTAAGATATTACGGATTGGGGCTAGAAAATGGATTTTACAACATTACCCTCCAATTTGCGGAAACAGCCATTCTTGATTCTACCACCTGGAAAAGCCTTGGGAGACGGGTCTTTGACATTTATATTCAGGGGACTCCTGTTTTGAAGGATTTTGACATACAACGAGAAGCTGGTGGTGTCTCTTATAGAGCTGTTCAAAAGAAATTTAGGTTTCAAGTGAAAGAAAACTATCTCGAGATCCATCTTTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGGCCAAGGTACTTATGGACCCTTGATTCAAGCCATCAATGCTATCCCAGATTTCGTACCTACTGTCAGCAATAAACCTCCAAGCAGTAAAAAGAATAAAGCGGGTCTGATCGTTGGAATTATTGTTGGTGTTGGAGCTATTTGCTTTCTAGCAGTTTTTGCCATTTTCTATATAAATAGGAGAAGAAAATTCTATGATGACAATGAAGAGCTTTTAGGCATTGATATAATGCCAAACACTTTCAGCTACTCTGAGTTAAAAAATGCTACAAGTGACTTCAATCGTGACAATAAACTTGGAGAGGGTGGTTTTGGACCTGTTTTTAAGGGGATACTTAATGATGGAAGAGATGTGGCTGTGAAACAACTATCTATAGGATCCCATCAAGGAAAGAGTCAGTTCATAGCTGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATACGGATGTTGTATTGAAGGGAGTAACCGACTACTTGTCTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGATTTATTCCTCAATTGGTCAACCCGTTATGATATTTGTATGGGTGTTGCAAGAGGCTTGACATATTTACACGAGGAGTCACGACTCCGAATTGTCCACCGTGATGTGAAGGCTAGTAATATTCTACTTGACTCTGAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCTAAATTATATGATGATAAAAAAACCCATATAAGCACCCGTGTTGCTGGGACAATTGGATATCTTGCACCGGAGTACGCCATGCGAGGACACCTCACAGAGAAAGCTGATGTTTTTTCCTTTGGTGTTGTGGCTCTCGAGTTGGTTAGTGGTAGGCCAAATTCTGATACAAGTTTGGAAGGAGAGAAGATGTATCTTCTAGAATGGGCTTGGCAGCTTCATGAAAGAAACAGTACCAGTGATCTGATAGATCCTAGACTATCAAAATTCAACATGGAAGAAGTCCAACGGCTTGTGGGAATAGCACTTTTGTGCACACAAACATCACCAACTTTACGACCATCAATGTCACGCGTGGTGGCAATGCTTTCAGGAGATATCGAAGTGAGCACTGTAACATCACGGCCCGGATACTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCATGACTGACATTTCAATGAAGGAATCAGATACAAGCATTGTTGGTGGACAACATATTCCTTCACCAAATGATCCTTCTAAATCCATCCTTCATGGGACTATTAGTGAGGGTAGGTAA 3069 0.4037 MKHCILGYALVIALCVLSCLVDFSQAQTANATTDPSEARVLNSIFSKWSIKADQTQWNISGELCSGRAIDSSSTIDDNTFNPFIKCDCSFNNKTTCRITALKVYARDVVGEIPPELWTLVYLTNLNLGQNYLKGSLPPAIANLTRMQYMSIGINALSGELPKELGDLTQLIVLGFGSNNFSGSLPSELGKLVKLEQLYMDSSGISGPIPPTFTNLNNLVTVWASDTELTGRIPDFIGNWSKLQSLRFEGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLEIIRNMKSLTTLELRNNNISGSIPPTLGELQNLTQLDLSFNKISGQIPGSIFNLSVLSSLFLGNNTLSGTLPQQKSSSLKNIDLSYNDLSGSFPSWINEPNLQLNIVANNLTIVNSNIGGLPTGINCLQKSFPCNRGAARYSDFAIKCGGPQITAIDGTVYQTDNETLGPATYFVTDTNRWAVSNVGIFTGITNPLFKSFVSNQFTGTVNSELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTTWKSLGRRVFDIYIQGTPVLKDFDIQREAGGVSYRAVQKKFRFQVKENYLEIHLFWAGKGTCCIPGQGTYGPLIQAINAIPDFVPTVSNKPPSSKKNKAGLIVGIIVGVGAICFLAVFAIFYINRRRKFYDDNEELLGIDIMPNTFSYSELKNATSDFNRDNKLGEGGFGPVFKGILNDGRDVAVKQLSIGSHQGKSQFIAEIATISAVQHRNLVKLYGCCIEGSNRLLVYEYLENKSLDQALFGNDLFLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDTSLEGEKMYLLEWAWQLHERNSTSDLIDPRLSKFNMEEVQRLVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTSRPGYLTDWKFDDVSSIMTDISMKESDTSIVGGQHIPSPNDPSKSILHGTISEGR 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01818 1022 MobiDBLite consensus disorder prediction 997 1014 - -
Trre16g01818 1022 CDD STKc_IRAK 696 957 - -
Trre16g01818 1022 Gene3D Transferase(Phosphotransferase) domain 1 766 968 - -
Trre16g01818 1022 Gene3D - 424 613 - -
Trre16g01818 1022 Pfam Malectin domain 424 609 IPR021720 -
Trre16g01818 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 766 969 - -
Trre16g01818 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 277 400 - -
Trre16g01818 1022 ProSiteProfiles Protein kinase domain profile. 690 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01818 1022 SUPERFAMILY Protein kinase-like (PK-like) 672 957 IPR011009 -
Trre16g01818 1022 FunFam Leucine-rich repeat transmembrane protein kinase 35 276 - -
Trre16g01818 1022 Pfam Leucine rich repeat 289 348 IPR001611 GO:0005515
Trre16g01818 1022 Gene3D Ribonuclease Inhibitor 278 411 IPR032675 -
Trre16g01818 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Trre16g01818 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 16 985 - -
Trre16g01818 1022 Pfam Protein tyrosine and serine/threonine kinase 693 957 IPR001245 GO:0004672|GO:0006468
Trre16g01818 1022 Gene3D Phosphorylase Kinase; domain 1 664 765 - -
Trre16g01818 1022 Gene3D Ribonuclease Inhibitor 34 277 IPR032675 -
Trre16g01818 1022 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
Trre16g01818 1022 SMART serkin_6 690 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01818 1022 FunFam Leucine-rich repeat receptor-like protein kinase 422 613 - -
Trre16g01818 1022 FunFam Leucine-rich repeat receptor-like protein kinase 659 765 - -
Trre16g01818 1022 MobiDBLite consensus disorder prediction 997 1022 - -
Trre16g01818 1022 SUPERFAMILY L domain-like 96 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01818 Trre-Chr16 14435386 14447097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01818 146 1022 Receptor kinase-like Gene Family AT1G56120 63.605 0.0 1148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01818 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01818 - - mtr:25502389 1687.93