Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01787 ATGAAGAAAATCAATCTATTACTAAGAAAGTGCAAGAGTTTGTCAAGCAAATTAGGAAGATCATCATCTTATAGTAGCTTAAGGTCAAAATCAACTAGAGAAGATATATATGAAATTCAACAAGATGAAAATTGTGAAACTATATTTGTTGGTAGGACAAGGAAAAGGTATGTGATAAGTTCAAAGTATTTGAATCATCCTCTTCTTAATGCATTGATCAACAAAAGTAAGCAAAAAGGTTGTGATTATGATAATAATGTTTTGATTGTTAATTGTGAGATTGTTCTTTTTGATCATTTATTATGGATGCTAGAAAATGCAGATCCTATGTTTAGTTCTGAGTCTTTGGAGGAATTAGCTGAACTTTATGTGTTATAA 378 0.291 MKKINLLLRKCKSLSSKLGRSSSYSSLRSKSTREDIYEIQQDENCETIFVGRTRKRYVISSKYLNHPLLNALINKSKQKGCDYDNNVLIVNCEIVLFDHLLWMLENADPMFSSESLEELAELYVL 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01787 125 Pfam Auxin responsive protein 11 104 IPR003676 GO:0009733
Trre16g01787 125 PANTHER EXPRESSED PROTEIN 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01787 Trre-Chr16 14234542 14234919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01787 48 106 Calmodulin-binding Proteins AT3G43120 31.667 2.87e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01787 - - gmx:100500162 145.976