Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01777 ATGAAAAACGGTACATTTGAGTATATATCTGGTGAAGATTTCAAGTACACAATTGTGTCAAATAATGATGAAGAGTACTTCACATACGAAACTCCAAATGATAAACTTACTGTATGGACTCTATTAGAAACTGGTCAACTGATAAACAAGGAAGGCGATGACATAGCAAGGGCTGATTTGTGTTATGGACATAACACTAATGAAGGGTGCCAAAAGTGGGATGAAGCAGAGATACCAACTTGCAGGAATCCTGATGATAAGTTTGAAAGCAAGCCAGGTTACGGTAATGTAAATACGGTATATGATATAACAAATGCAAGTTATGGCGTAAGTGATTGTCAAGCTATTTGCTGGAGTAACTGCAGCTGCTTTGGATTCAAAACCTTTTATGCTAATGGAACTGGTTGTGTCATCTTGTTATCAACTAAAGGTCTTAACATTGCAAGCACTGGTTATTACTTATTTTACATTCTAGTAAAGAACACTGATCACAAAGGTAACAATAACAAGAAGTGGATATGGATTTGCGTTGGAATGGGGACTGTTGTATTAGTTATTGGCCTTTCCATTCTGTTCCGAGCCTTAAGGAAACGAAAATATGTGCTTCAAGAGAAGGAAAGAATGAAAATGCAGATTGGGATTCAAGATCTTGAAGGTTCTAGGCGATACTCTGATGGCGATGATCTAGAAGGTCACTTAAGCAATGGAGATGACTTAAAAGTATTTAGCTATTCAACAATAACGGTTGCTACCAATGGTTTTTCATCAGAAAACAAGTTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTATACCTTCAGGGCAAGAAGTAGCTGTGAAGAAACTTTCAAAAACTTCTGGACAAGGAATTACTGAATTTAGAAATGAATTAACACTCATTTGTAAGCTTCAGCATACAAATCTTGTTCAGCTAATCGGTCATTGCATTCATGAACAAGAGCGGATGTTGATCTATGAGTATATGCCCAACAAAAGTTTGGACTTCTTTTTATTTGACGGCACTAGAAGAAAGTTGCTAGATTGGAACAAAGTGTCACACGGTTCGCAATTCGCTTTGGTACGCGGAATTGCTCAAGGATTACTATATCTTCACAAATACTCGAGACTCAGAATTATCCACAGAGATTTGAAGGCTAGTAATATTCTCCTTGATGAAAATATGAACCCCAAAATTTCTGATTTTGGTGTGGCAAGAATGTTCACAAAACAAGAAACCGAAGCAAATACCAATAGGATTGTTGGGACATACGGTTATATGTCTCCAGAGTATGCGATGGAAGGAGTTTTTTCTACAAAGTCTGATGTGTATAGTTTCGGAGTGTTGCTCCTTGAAATTATTAGTGGTGAAAAAAACAATAGCTTCTACTCGGACGACAGACCACTTAATCTAGTAGGACATGCATGGGAGCTATGGAAAGAAGGTGTGGTTCTTCAATTGGTGGATCCATTACTAAATGAGTCGTTTTCCGAGGATGAGGTGATAAGATGTGTTCATGCTGGTTTATTATGCGTAGAAGAAAATGCAGATGATCGCCCCACCATGTCCAATGTTATATCAATGTTAACAAACAAAATCAAACCTGATGTTTTGCCTAAGAAACCAGCATACTATGGTAGAACAAGAGTGTTCGAGGAAGAAACTCTTGTCGAAGAATTGGGTGTGGAATCCACATATGAAAACTCTCCTTCACACGTAAAATCAATATAA 1734 0.3772 MKNGTFEYISGEDFKYTIVSNNDEEYFTYETPNDKLTVWTLLETGQLINKEGDDIARADLCYGHNTNEGCQKWDEAEIPTCRNPDDKFESKPGYGNVNTVYDITNASYGVSDCQAICWSNCSCFGFKTFYANGTGCVILLSTKGLNIASTGYYLFYILVKNTDHKGNNNKKWIWICVGMGTVVLVIGLSILFRALRKRKYVLQEKERMKMQIGIQDLEGSRRYSDGDDLEGHLSNGDDLKVFSYSTITVATNGFSSENKLGQGGFGPVFKGIIPSGQEVAVKKLSKTSGQGITEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYMPNKSLDFFLFDGTRRKLLDWNKVSHGSQFALVRGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGVARMFTKQETEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKNNSFYSDDRPLNLVGHAWELWKEGVVLQLVDPLLNESFSEDEVIRCVHAGLLCVEENADDRPTMSNVISMLTNKIKPDVLPKKPAYYGRTRVFEEETLVEELGVESTYENSPSHVKSI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01777 577 Pfam PAN-like domain 102 138 IPR003609 -
Trre16g01777 577 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 221 329 - -
Trre16g01777 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Trre16g01777 577 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 330 537 - -
Trre16g01777 577 SMART serkin_6 254 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01777 577 Pfam Protein tyrosine and serine/threonine kinase 257 529 IPR001245 GO:0004672|GO:0006468
Trre16g01777 577 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 104 560 - -
Trre16g01777 577 Gene3D Transferase(Phosphotransferase) domain 1 330 539 - -
Trre16g01777 577 SUPERFAMILY Protein kinase-like (PK-like) 238 549 IPR011009 -
Trre16g01777 577 ProSiteProfiles Protein kinase domain profile. 254 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01777 577 Gene3D Phosphorylase Kinase; domain 1 222 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01777 Trre-Chr16 14155574 14160077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01777 242 566 Receptor kinase-like Gene Family AT3G45860 55.657 7.04e-125 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01777 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01777 - - vra:106778432 710.294