Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01776 ATGAAAAACGGTACATTTGAGTATATATCTGGTGAAGATTTCAAGTACACAATTGTGTCAAATAATGATGAAGAGTACTTCACATACGAAACTCCAAATGATAAACTTACTGTATGGACTCTATTAGAAACTGGTCAACTGATAAACAAGGAAGGCGATGACATAGCAAGGGCTGATTTGTGTTATGGACATAACACTAATGAAGGGTGCCAAAAGTGGGATGAAGCAGAGATACCAACTTGCAGGAATCCTGATGATAAGTTTGAAAGCAAGCCAGGTTACGGTAATGTAAATACGGTATATGATATAACAAATGCAAGTTATGGCGTAAGTGATTGTCAAGCTATTTGCTGGAGTAACTGCAGCTGCTTTGGATTCAAAACCTTTTATGCTAATGGAACTGGTTGTGTCATCTTGTTATCAACTAAAGGTCTTAACATTGCAAGCACTGGTTATTACTTATTTTACATTCTAGTAAAGAACACTGATCACAAAGGTAACAATAACAAGAAGTGGATATGGATTTGCGTTGGAATGGGGACTGTTGTATTAGTTATTGGCCTTTCCATTCTGTTCCGAGCCTTAAGGAAACGAAAATATGTGCTTCAAGAGAAGGAAAGAATGAAAATGCAGATTGGGATTCAAGATCTTGAAGGTTCTAGGCGATACTCTGATGGCGATGATCTAGAAGGTCACTTAAGCAATGGAGATGACTTAAAAGTATTTAGCTATTCAACAATAACGGTTGCTACCAATGGTTTTTCATCAGAAAACAAGTTAGGACAGGGTGGCTTTGGACCTGTTTTTAAGGGAATTATACCTTCAGGGCAAGAAGTAGCTGTGAAGAAACTTTCAAAAACTTCTGGACAAGGAATTACTGAATTTAGAAATGAATTAACACTCATTTGTAAGCTTCAGCATACAAATCTTGTTCAGCTAATCGGTCATTGCATTCATGAACAAGAGCGGATGTTGATCTATGAGTATATGCCCAACAAAAGTTTGGACTTCTTTTTATTTGACGGCACTAGAAGAAAGTTGCTAGATTGGAACAAAGTGTCACACGGTTCGCAATTCGCTTTGGTACGCGAAACCGAAGCAAATACCAATAGGATTGTTGGGACATACGGTTATATGTCTCCAGAGTATGCGATGGAAGGAGTTTTTTCTACAAAGTCTGATGTGTATAGTTTCGGAGTGTTGCTCCTTGAAATTATTAGTGGTGAAAAAAACAATAGCTTCTACTCGGACGACAGACCACTTAATCTAGTAGGACATGCATGGGAGCTATGGAAAGAAGGTGTGGTTCTTCAATTGGTGGATCCATTACTAAATGAGTCGTTTTCCGAGGATGAGGTGATAAGATGTGTTCATGCTGGTTTATTATGCGTAGAAGAAAATGCAGATGATCGCCCCACCATGTCCAATGTTATATCAATGTTAACAAACAAAATCAAACCTGATGTTTTGCCTAAGAAACCAGCATACTATGGTAGAACAAGAGTGTTCGAGGAAGAAACTCTTGTCGAAGAATTGGGTGTGGAATCCACATATGAAAACTCTCCTTCACACGTAAAATCAATATAA 1587 0.38 MKNGTFEYISGEDFKYTIVSNNDEEYFTYETPNDKLTVWTLLETGQLINKEGDDIARADLCYGHNTNEGCQKWDEAEIPTCRNPDDKFESKPGYGNVNTVYDITNASYGVSDCQAICWSNCSCFGFKTFYANGTGCVILLSTKGLNIASTGYYLFYILVKNTDHKGNNNKKWIWICVGMGTVVLVIGLSILFRALRKRKYVLQEKERMKMQIGIQDLEGSRRYSDGDDLEGHLSNGDDLKVFSYSTITVATNGFSSENKLGQGGFGPVFKGIIPSGQEVAVKKLSKTSGQGITEFRNELTLICKLQHTNLVQLIGHCIHEQERMLIYEYMPNKSLDFFLFDGTRRKLLDWNKVSHGSQFALVRETEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIISGEKNNSFYSDDRPLNLVGHAWELWKEGVVLQLVDPLLNESFSEDEVIRCVHAGLLCVEENADDRPTMSNVISMLTNKIKPDVLPKKPAYYGRTRVFEEETLVEELGVESTYENSPSHVKSI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01776 528 Pfam PAN-like domain 102 138 IPR003609 -
Trre16g01776 528 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 104 352 - -
Trre16g01776 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 360 486 - -
Trre16g01776 528 Pfam Protein tyrosine and serine/threonine kinase 257 354 IPR001245 GO:0004672|GO:0006468
Trre16g01776 528 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 221 329 - -
Trre16g01776 528 Gene3D Transferase(Phosphotransferase) domain 1 334 490 - -
Trre16g01776 528 SUPERFAMILY Protein kinase-like (PK-like) 238 500 IPR011009 -
Trre16g01776 528 Gene3D Phosphorylase Kinase; domain 1 222 329 - -
Trre16g01776 528 ProSiteProfiles Protein kinase domain profile. 254 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01776 Trre-Chr16 14155574 14160077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01776 242 517 Receptor kinase-like Gene Family AT3G45860 47.205 1.14e-93 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g01776 PK_Tyr_Ser-Thr 8.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01776 - - vra:106778432 600.897