Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01772 ATGATGGAACAATCAAGATTCGACAAACAGCTTCAATGCAATACCATGGAACCTAGAAATGAGGAAATCCAGCCTGGATCTCAGTCAGTAATGCAGGACTATCTGGACAGCATGTATGCTAATAAATCAGATGTTAAACAAGTACGGAATTATTCAATACAAACTGGTGAGGAATTTTCTCTTGAATTTATGAGAGATAGGGTAAATCTCACAAAGCCTGTAATTTCACATGTTGGTGATGCCAATTCTACAACTAATGGTATGGAACCGAAAGGTGCTCTAGGCATCAGTCATGCAGGATTTGAGAATGGCTCCAGCGTTTCTATGCTCCCAACGGTTGATAGAAGTTCAACAGAGTTTAACAGACAGAGTACATGGTTACATGGAGACAGAAGCAATTATGGGTCAATTCGATCAACACCAGGAACTCCATCGAATCAAGACAGCGGTCAATTTGGGCGAGTGTATGGTTCTTATGGTGGCTCGGATAGCTCATCAAGGATGATGAAGTGTCTTTGTAGCTTTGGTGGTAGAATATTACCAAGGCCAAGTGATGGAAAACTAAGGTATGTGGGAGGTCAGACACGAATTCTTCGTCTGAGAAAAGACATATCTTGGCTGGAGCTTAGGCAGAAAGCATTGTTAATCTACAATCTTGTTCATATACTAAAGTATCAACTTCCTGGGGAAGATCTGGATGCTTTGGTATCTGTATCATCTGATGAGGATTTACAGAATATGATGGAGGAGTATAATCTTATAGAAGATAGGGAGCCCCCACAAAAGCTTAGGATTTTTTTGTTTTCAATGAGTGATTTAAAAGATGCTCAGTTCGCTCTCAGCAGCATTGGTGATAATTCTGAGTTCCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAACAACTCAACCTCACTTGGTGTCAGCATTTCAGCCAACGGTATACGTGAATTTGACAAAAAAGCTATCGTAAGGGAGGCTAGTAATGTTGCTGTAGAATCTATACGTGTCAGGAATGCTCCCTCGACTAACAAATCTGACACTATATTGGCTACTCAGTCTTCACAGCAAGTATTACCGACGTCTCCACATGCTTATGAAACTGATCAGCTGGCTTATAGTGATCAAATGATACAATCTGCAGAAATTAGTCGTCAATATGCTGTTCACAATGGCCTTCATCCCTCTCATAACCCTGTTGTTGGCGAGGCTCCTATTTCTATGGCTCCTCATCTTTTGAACAATCAACCAGAGATTCTGAATGTAGACCATCCACCTAGTGGAGTACAAATTCAAAAATCTGAACTATCTACCTCACAGATAGAAACTATAGGGGATAATTCAGGAAAACAAGGGAGTGACCATGGTAACATTCTATCCTTGGAAACCCCAGTCCCATCTCCGCCTCAGCCCTTTGATGATTACTTGAAAAATAATGGTCCTGAAGCATCAACTGTAGTTACCATGCCTGAGGGGCATCTACCTTCGTCCCCTTGCACAAAAAAAGTTCCGCACCAGGATTGTGAAGAGGCCTCTTCTACATCCAGCAGTTCATTTGTTCCTAATTATGTTGATTCCCACTCCAATGCAATTGATTTGAGTTGTCTTCATCCTCCTCCAGTTCCCAAAAGAGTTTACTATTCAGAAAGAGCTCCGAGGGAGCAAGTAGAGGTCCTGAACCGATCCTCAAAATCAGATGATGCACCCAGCTCGCAGTTTCATGCGTCAGATTTGCTTTCCAATATCAAGCCAGATGGGCCAGTAACACAATCTGGCAACAACTTGAATGATGGTAGTCTGTTAGAGCCAGATGAGAAACCGAGTATTTCTGCAAAGCCCTTTCCTGCAGATGACCACACCGTTGACAATGGGTTTGCCACTCATCAAATGAATAAACTGTTGCTTGATACAAACAGCGAGGTAAAGTCAAACCTATCTGAGCACATGGATCCTGAGTTGAAGCAAGCTGTACTGAGTAACGAAGGAATGAAAGATGTGGAAACTAAAGATAACCATATCAAGCCCTTGCTTGATGAAACCGAAACTAAATGTGGTAAATCAGATCTTCCCGCTCTTCATCATGTTTCCTCTGTTGAGCGCCTTGATGTTATAGCATCTAATCTTCCAGAGATTGATTGGGGTGAGGCCTATGGGAAGGAATCTAATGATAACCACATGGTGCAAGAACTACCTGTTTCTTTAGCTGGGAACATAACCAACGATGTTTCTCAAGATTTTCCCCCAAATGTTTCCAACCAAGTACAAGGTGACATTCTGATTGATATCGATGATCGATTCCCCCGTGAATTGCTTTCTGATATGTATTCTAAAGCAATACTCCAAGAAGAACCCTCCAGTCTGCACCCACTATCCGCAGACGGGACAGCCTATAGTGTAAATATGGAAAATCACGAACCTAAAAGTTGGTCATACTTTGGAAAGCTGGCACAAGGGCTTGACAATGTTTCTCTTATTGATCAAGATCATCTTGGTTTTTCACATCATCCTACACCTCAAACAACTGATAGTGTTCATCTAGATCATGAGGATTCCCACCTCAATTTTGATGAAGAAAATCAGGACATACATAGAAGGAATGGAACAGAAACCCATGCTCTTAAGTCCAATTATGATCAATCCCAACTTAGTGACACCAAAAGTATGCAGTTCGAGGGTATGTTGAAAAATCTAGGAGCACAAGAGTCTGAGTACGAGGATGGGAAATTTGTAACCAAAAATTGTAATTTATCTCCACTTGATCCTTCAGGAAATTTTGATATCGGTTCAGTCCAGGTCATTAAGAATGAAGATCTTGAAGAGTTGAGGGAACTAGGTTCTGGTACATTTGGGACTGTGTATCATGGAAAATGGAGAGGATCAGATGTTGCTATCAAAAGAATAAAGAAGAGCTGCTTCACCGGTCGAACATCTGAGCAAGAGAGACTGACTGCTGAGTTCTGGCGAGAAGCTGACATTCTTTCAAAGCTTCATCATCCAAATGTGGTCGCATTTTACGGTGTAGTACAGGATGGACCAGGAGGAACAATGGCTACTGTTACAGAATACATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGTAAAAGGCTGATTATTGCAATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAACATTGTGCATTTCGACTTAAAATGCGACAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGTTTGTCAAAAATTAAACGAAATACCTTGGTTACTGGTGGTGTTCGGGGAACTCTACCTTGGATGGCACCAGAGCTGCTTAATGGAAACAGCAACAAGGTCTCGGAAAAGGTTGATGTCTTCTCCTTTGGCATACTGCTATGGGAAATTTTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTGCGGCCAACCATTCCAAGCCACTGCGATCTCGAATGGAGAACACTGATGGAGCAATGTTGGGCACCGAATCCTGTAGCCAGGCCTTCCTTCACAGAAATTGCAAGTCGCTTGCGCATAATGTCCGCAGCAGCTAGTCAAACTAAGCCACAGGGAAACAAGCCATCTAAATGA 3672 0.4194 MMEQSRFDKQLQCNTMEPRNEEIQPGSQSVMQDYLDSMYANKSDVKQVRNYSIQTGEEFSLEFMRDRVNLTKPVISHVGDANSTTNGMEPKGALGISHAGFENGSSVSMLPTVDRSSTEFNRQSTWLHGDRSNYGSIRSTPGTPSNQDSGQFGRVYGSYGGSDSSSRMMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWLELRQKALLIYNLVHILKYQLPGEDLDALVSVSSDEDLQNMMEEYNLIEDREPPQKLRIFLFSMSDLKDAQFALSSIGDNSEFQYVVAVNGMDLGSRNNSTSLGVSISANGIREFDKKAIVREASNVAVESIRVRNAPSTNKSDTILATQSSQQVLPTSPHAYETDQLAYSDQMIQSAEISRQYAVHNGLHPSHNPVVGEAPISMAPHLLNNQPEILNVDHPPSGVQIQKSELSTSQIETIGDNSGKQGSDHGNILSLETPVPSPPQPFDDYLKNNGPEASTVVTMPEGHLPSSPCTKKVPHQDCEEASSTSSSSFVPNYVDSHSNAIDLSCLHPPPVPKRVYYSERAPREQVEVLNRSSKSDDAPSSQFHASDLLSNIKPDGPVTQSGNNLNDGSLLEPDEKPSISAKPFPADDHTVDNGFATHQMNKLLLDTNSEVKSNLSEHMDPELKQAVLSNEGMKDVETKDNHIKPLLDETETKCGKSDLPALHHVSSVERLDVIASNLPEIDWGEAYGKESNDNHMVQELPVSLAGNITNDVSQDFPPNVSNQVQGDILIDIDDRFPRELLSDMYSKAILQEEPSSLHPLSADGTAYSVNMENHEPKSWSYFGKLAQGLDNVSLIDQDHLGFSHHPTPQTTDSVHLDHEDSHLNFDEENQDIHRRNGTETHALKSNYDQSQLSDTKSMQFEGMLKNLGAQESEYEDGKFVTKNCNLSPLDPSGNFDIGSVQVIKNEDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFTGRTSEQERLTAEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGNSNKVSEKVDVFSFGILLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSHCDLEWRTLMEQCWAPNPVARPSFTEIASRLRIMSAAASQTKPQGNKPSK 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01772 1223 MobiDBLite consensus disorder prediction 447 463 - -
Trre16g01772 1223 MobiDBLite consensus disorder prediction 447 473 - -
Trre16g01772 1223 PRINTS Tyrosine kinase catalytic domain signature 1060 1078 IPR001245 GO:0004672|GO:0006468
Trre16g01772 1223 PRINTS Tyrosine kinase catalytic domain signature 1023 1036 IPR001245 GO:0004672|GO:0006468
Trre16g01772 1223 PRINTS Tyrosine kinase catalytic domain signature 1131 1153 IPR001245 GO:0004672|GO:0006468
Trre16g01772 1223 PRINTS Tyrosine kinase catalytic domain signature 1175 1197 IPR001245 GO:0004672|GO:0006468
Trre16g01772 1223 PANTHER SERINE-THREONINE PROTEIN KINASE 223 1205 - -
Trre16g01772 1223 CDD STKc_MAP3K-like 947 1204 - -
Trre16g01772 1223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1066 1078 IPR008271 GO:0004672|GO:0006468
Trre16g01772 1223 Pfam PB1 domain 185 268 IPR000270 GO:0005515
Trre16g01772 1223 CDD PB1_UP2 172 268 - -
Trre16g01772 1223 Gene3D Transferase(Phosphotransferase) domain 1 1029 1222 - -
Trre16g01772 1223 Gene3D Phosphorylase Kinase; domain 1 934 1028 - -
Trre16g01772 1223 ProSitePatterns Protein kinases ATP-binding region signature. 947 972 IPR017441 GO:0005524
Trre16g01772 1223 SMART PB1_new 183 270 IPR000270 GO:0005515
Trre16g01772 1223 ProSiteProfiles Protein kinase domain profile. 941 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01772 1223 MobiDBLite consensus disorder prediction 493 524 - -
Trre16g01772 1223 MobiDBLite consensus disorder prediction 121 163 - -
Trre16g01772 1223 SMART serkin_6 941 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01772 1223 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 188 270 - -
Trre16g01772 1223 SUPERFAMILY CAD & PB1 domains 184 273 - -
Trre16g01772 1223 Pfam Protein tyrosine and serine/threonine kinase 942 1204 IPR001245 GO:0004672|GO:0006468
Trre16g01772 1223 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1029 1221 - -
Trre16g01772 1223 Gene3D - 187 270 - -
Trre16g01772 1223 MobiDBLite consensus disorder prediction 580 620 - -
Trre16g01772 1223 SUPERFAMILY Protein kinase-like (PK-like) 929 1204 IPR011009 -
Trre16g01772 1223 MobiDBLite consensus disorder prediction 580 601 - -
Trre16g01772 1223 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 934 1028 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01772 Trre-Chr16 14124358 14133205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01772 502 584 MAP Kinase Kinase Kinase AT1G79570 50.602 1.86e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre16g01772 PK_Tyr_Ser-Thr 3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01772 - - psat:127075466 1845.48