Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01758 ATGAGAAACCACCTATTTCCTGTTGGAAAAGAGGAGGAGGCACGCAAATACCTCCCTGCTGTCCTAATGCATGCAAGTGGACATAAGCCTAATATGGAAGCTGGATCTAGTAAGCAGAAAAATAAGAAAATCAAGAGAGATGTTATTGAAGTTGAAGAAGAAAAAGTGTCATCAAGATTTTATCCTAAGGAGGAAACCATATTTGGTGCTGCAAGTATTCTACCTCAAGCTTTCTTCTTTAATTTTGACAATTTACCCCCAAACTATGGGGTTTGGACATTCAAATTGAGTCCTTCTCTAAATAAGGAAGGAAGTCCATCCTTGCCACAAATTACTTCATGTTATGCACAAATGAGGAATCTTAGTGTGCCAATCTCCTACATTTACAAGTTTTTGAAAAAGAAACTTGGTTTTGTGAGCCAAGACGAGGTTGAAATTACATGTATGGGTATACCTGTGCTCCCAACAACAACAACAGATGAATTGGTTAAGTTTTGGCTGAATACAAATGACAAAAATGAAGGCACAACAGATGATCGTCTCAGAGTTCATCTAAACTATGCTCGGAAGGTTCCATCACCCTCTACTTGA 591 0.3841 MRNHLFPVGKEEEARKYLPAVLMHASGHKPNMEAGSSKQKNKKIKRDVIEVEEEKVSSRFYPKEETIFGAASILPQAFFFNFDNLPPNYGVWTFKLSPSLNKEGSPSLPQITSCYAQMRNLSVPISYIYKFLKKKLGFVSQDEVEITCMGIPVLPTTTTDELVKFWLNTNDKNEGTTDDRLRVHLNYARKVPSPST 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01758 196 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 31 190 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01758 Trre-Chr16 13991384 13995809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01758 108 169 C3H Transcription Factor Family AT3G23060 38.710 2.93e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01758 K16277 - qsu:112007570 96.6709