Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g01757 | ATGCAGGTGGATAGGATGGGAGAATTTTATGCTAGGAGCGAAAAGATTGCAAAATTGATGTCTTGCAACCAACTGCTAACTGATGCTACCAAAATCCTCAACTGCTTTCATACTTTTTGCAAGGAGTGCATTTATACCCAAATAAGAGAAGAAGAATTGGAATGTTGTCCTATTGAAGATGAGTTTATGTTAGACACCGACACGAGATCAACACATACATGCATGTAA | 228 | 0.3816 | MQVDRMGEFYARSEKIAKLMSCNQLLTDATKILNCFHTFCKECIYTQIREEELECCPIEDEFMLDTDTRSTHTCM | 75 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g01757 | 75 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE DRIP1 | 13 | 58 | IPR044807 | GO:0004842 | |
Trre16g01757 | 75 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 74 | IPR013083 | - | |
Trre16g01757 | 75 | SUPERFAMILY | RING/U-box | 26 | 58 | - | - | |
Trre16g01757 | 75 | Pfam | RING-type zinc-finger | 22 | 51 | IPR027370 | - | |
Trre16g01757 | 75 | ProSitePatterns | Zinc finger RING-type signature. | 35 | 44 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g01757 | Trre-Chr16 | 13989524 | 13991066 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g01757 | 22 | 60 | C3H Transcription Factor Family | AT2G30580 | 56.410 | 9.41e-12 | 56.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g01757 | K16277 | - | psat:127093598 | 81.2629 |