Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01757 ATGCAGGTGGATAGGATGGGAGAATTTTATGCTAGGAGCGAAAAGATTGCAAAATTGATGTCTTGCAACCAACTGCTAACTGATGCTACCAAAATCCTCAACTGCTTTCATACTTTTTGCAAGGAGTGCATTTATACCCAAATAAGAGAAGAAGAATTGGAATGTTGTCCTATTGAAGATGAGTTTATGTTAGACACCGACACGAGATCAACACATACATGCATGTAA 228 0.3816 MQVDRMGEFYARSEKIAKLMSCNQLLTDATKILNCFHTFCKECIYTQIREEELECCPIEDEFMLDTDTRSTHTCM 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01757 75 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 13 58 IPR044807 GO:0004842
Trre16g01757 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 74 IPR013083 -
Trre16g01757 75 SUPERFAMILY RING/U-box 26 58 - -
Trre16g01757 75 Pfam RING-type zinc-finger 22 51 IPR027370 -
Trre16g01757 75 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01757 Trre-Chr16 13989524 13991066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01757 22 60 C3H Transcription Factor Family AT2G30580 56.410 9.41e-12 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01757 K16277 - psat:127093598 81.2629