Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01754 ATGGTTACTCTCAAGGGAAAATCGAGATTAGGATCAACTCGATCCTCAGTAGGTGGCCTATCGCGTCCAACTGTGGGTGGTAAGAATTTCAAGGTTTTTTCGGAAAATGACCGGATTAAAGTCGATGATGGAACCATGACATCCGCGAGAGAAGTCGGTGCAGTTTCAAGAAAGAGTGCTATAGAAGCTAACAAAGGGGTTATTTCAAATGGTGTCAATAAATCAAAGGGTGACTTCAAAAGCATGGAGAAAAGTAAAGGAACTTATGGCTCTTCTGCAAATATGAAAGCGAGAAAGGCATTGGCTGATGTTACCAATGCTCAAGGAAACTCTACGGCAGCTGCTAAGCGTAATATCTCCAAAATTAAGGTTTCAGCAGGTTCAACTACTAAAACAGTTGGCATCTCTCTGAGGAAATCCTGCACGGTAAGAGAGCAAAGAAATTCTGGTCGTGGCGGAGTTCCATTAGATGCTCCCAATGGAGGTTTAAGGGTTTCTTTAGGTGATCAGAAGAATAGTTCTAATTCAAATGGAGGTCAATCAGTTGCCATAAAGGATAGGATTGCAAGGAGGAAGCCTATGTTACCTACAACTACAAGGAAGTCTCTGCCAGTTCCTTTAGGCACAGGTTTAAGGGTTTCTTTAGGTGATCAGAAGAATAGTTCAAATGGACGTCAATCAGTTGCCATAAAGGATAGGTTTGCAAGGAAGCCTATGTTACCTACAACCACAAGCATTTCAAGGAAGTCTCTGCCAGTTCCAAGAAGGGTAAACGGGGTTGATATGAATAACACAAAGGAAAACGCTGGAAGTTCTGAAAGAGCTAATGACCAAAGTGGTCTTCCAAGTAAGCTGACAACTGGCAGAAGAGTTAGTTCCCAACTAACAAGGAGCCGTCTATTGAAGACTCGAGTTAGTGATGGCTTTATTCAAATGGTTACAAGCAATGCTTACCAAGCATCCTCAAGGAAGTCCACCAAGCCTATTGTTAAGACCACACTCAAGGCTTCTACATCTCAGAGGATTTTAAAATCTAAATCCGTAACAGATGAGAACAAATCAAAACCAACCACTGCAATAGCATCTAAGGATGAGGAAAAAGTTTCTTTGTCTCTTCCCGAGAATAGTTCAGTGGTCGTTTCCGATGACGCAAATCAAAAGCATCGACCATCTGAAGGGGAGAGCAGTCTGAAAACAGATTTGTCAGAGTTGATTCCAAGAAAAAGATCCAGCCGTCGGAAATCTTATACAACTTCATTAATGGAAAAATCTAAGATTCTCAAGGAAAATGGTGAAGTTAGAGGGCAGGATAACTTACCAAATATAGATGATGAATGTAATCATCTAGAAGTTTCTGAATACATAGACGATATATATCAGTACTATTGGGTTACCGAGGCACATAGTCAAGCTCTATCAAATTACATGTCAATTCAGACAGAGATTACTCCTCATATGCGGGGAGTATTGGTCAACTGGCTAATTGAGGTACACTTCAAATATGATTTGATGCCCGAGACCCTATATCTGACAGTGACATTGTTGGATCAATATCTTTCCCAAGTGAACATAAAAACAAGTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCGAAGTATGAGGATTTTTGGCATCCAAGGGTAAAAGATTTGATTAGCATCTCAGCCGAGGCGTATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATTCTTAGAAAATTGAAGTTCCGTCTTAATGCTCCCACTCCTTACGTTTTTATGGTTAGGTTTCTCAAGGCTGCACAATCAGATAAGAAGCTTGAACACCTGTCATTCTTTCTCATTGACCTATGCTTAGTTGAATATGAAGCTTTAGCGTTCAAGCCTTCATTACTATGTGCATCAGCTCTCTATGTTGCACGTTGTACCCTGAAAGTAACCCCAACATGGACACCACTACTTCACAAGCATGCGCGCTACGAAGTTTCACAGATCAGGGATTGTGCGGATATGATATTGAGATTCCATAAAGCTGCTGGGAAGGGGAAGTTAAAGGTCGCTTACGAAAAATATTCCAGAAAGGAACTCAGTGGGGTCGCAGCAGTGAAGCCGTTGGATAGACTTCCCCATTGA 2124 0.4129 MVTLKGKSRLGSTRSSVGGLSRPTVGGKNFKVFSENDRIKVDDGTMTSAREVGAVSRKSAIEANKGVISNGVNKSKGDFKSMEKSKGTYGSSANMKARKALADVTNAQGNSTAAAKRNISKIKVSAGSTTKTVGISLRKSCTVREQRNSGRGGVPLDAPNGGLRVSLGDQKNSSNSNGGQSVAIKDRIARRKPMLPTTTRKSLPVPLGTGLRVSLGDQKNSSNGRQSVAIKDRFARKPMLPTTTSISRKSLPVPRRVNGVDMNNTKENAGSSERANDQSGLPSKLTTGRRVSSQLTRSRLLKTRVSDGFIQMVTSNAYQASSRKSTKPIVKTTLKASTSQRILKSKSVTDENKSKPTTAIASKDEEKVSLSLPENSSVVVSDDANQKHRPSEGESSLKTDLSELIPRKRSSRRKSYTTSLMEKSKILKENGEVRGQDNLPNIDDECNHLEVSEYIDDIYQYYWVTEAHSQALSNYMSIQTEITPHMRGVLVNWLIEVHFKYDLMPETLYLTVTLLDQYLSQVNIKTSDMQLVGLTALLLASKYEDFWHPRVKDLISISAEAYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFLKAAQSDKKLEHLSFFLIDLCLVEYEALAFKPSLLCASALYVARCTLKVTPTWTPLLHKHARYEVSQIRDCADMILRFHKAAGKGKLKVAYEKYSRKELSGVAAVKPLDRLPH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01754 707 MobiDBLite consensus disorder prediction 344 420 - -
Trre16g01754 707 SMART Cyclin_C_2 585 702 IPR004367 -
Trre16g01754 707 MobiDBLite consensus disorder prediction 385 420 - -
Trre16g01754 707 FunFam Cyclin N-terminal domain containing 2 472 580 - -
Trre16g01754 707 Gene3D - 471 577 - -
Trre16g01754 707 MobiDBLite consensus disorder prediction 166 182 - -
Trre16g01754 707 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01754 707 MobiDBLite consensus disorder prediction 214 228 - -
Trre16g01754 707 MobiDBLite consensus disorder prediction 71 91 - -
Trre16g01754 707 MobiDBLite consensus disorder prediction 261 299 - -
Trre16g01754 707 Pfam Cyclin, C-terminal domain 585 699 IPR004367 -
Trre16g01754 707 MobiDBLite consensus disorder prediction 1 29 - -
Trre16g01754 707 Pfam Cyclin, N-terminal domain 457 583 IPR006671 -
Trre16g01754 707 Gene3D - 578 705 - -
Trre16g01754 707 PANTHER CYCLINS 403 689 IPR039361 -
Trre16g01754 707 SMART cyclin_7 589 671 IPR013763 -
Trre16g01754 707 SMART cyclin_7 492 576 IPR013763 -
Trre16g01754 707 CDD CYCLIN_AtCycB-like_rpt2 585 701 - -
Trre16g01754 707 MobiDBLite consensus disorder prediction 346 370 - -
Trre16g01754 707 SUPERFAMILY Cyclin-like 585 704 IPR036915 -
Trre16g01754 707 MobiDBLite consensus disorder prediction 144 299 - -
Trre16g01754 707 CDD CYCLIN_CCNB1-like_rpt1 451 580 - -
Trre16g01754 707 FunFam putative cyclin-B3-1 isoform X3 581 706 - -
Trre16g01754 707 SUPERFAMILY Cyclin-like 447 583 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01754 Trre-Chr16 13965674 13974293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01754 25 706 Core Cell Cycle Gene Families AT1G16330 42.219 3.04e-159 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01754 K21777 - tpra:123899654 927.161