Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01753 ATGGTTACTCTCAAGGGAAAATCGAGATTAGGATCAACTCGATCCTCAGTAGGTGGCCTATCGCGTCCAACTGTGGGTGGTAAGAATTTCAAGGTTTTTTCGGAAAATGACCGGATTAAAGTCGATGATGGAACCATGACATCCGCGAGAGAAGTCGGTGCAGTTTCAAGAAAGAGTGCTATAGAAGCTAACAAAGGGGTTATTTCAAATGGTGTCAATAAATCAAAGGGTGACTTCAAAAGCATGGAGAAAAGTAAAGGAACTTATGGCTCTTCTGCAAATATGAAAGCGAGAAAGGCATTGGCTGATGTTACCAATGCTCAAGGAAACTCTACGGCAGCTGCTAAGCGTAATATCTCCAAAATTAAGGTTTCAGCAGGTTCAACTACTAAAACAGTTGGCATCTCTCTGAGGAAATCCTGCACGGTAAGAGAGCAAAGAAATTCTGGTCGTGGCGGAGTTCCATTAGATGCTCCCAATGGAGGTTTAAGGGTTTCTTTAGGTGATCAGAAGAATAGTTCTAATTCAAATGGAGGTCAATCAGTTGCCATAAAGGATAGGATTGCAAGGAGGAAGCCTATGTTACCTACAACTACAAGCACTTCAAGGAAGTCTCTGCCAGTTCCTTTAGGCACAGGTTTAAGGGTTTCTTTAGGTGATCAGAAGAATAGTTCAAATGGACGTCAATCAGTTGCCATAAAGGATAGGTTTGCAAGGAAGCCTATGTTACCTACAACCACAAGCATTTCAAGGAAGTCTCTGCCAGTTCCAAGAAGGGTAAACGGGGTTGATATGAATAACACAAAGGAAAACGCTGGAAGTTCTGAAAGAGCTAATGACCAAAGTGGTCTTCCAAGTAAGCTGACAACTGGCAGAAGAGTTAGTTCCCAACTAACAAGGAGCCGTCTATTGAAGACTCGAGTTAGTGATGGCTTTATTCAAATGGTTACAAGCAATGCTTACCAAGCATCCTCAAGGAAGTCCACCAAGCCTATTGTTAAGACCACACTCAAGGCTTCTACATCTCAGAGGATTTTAAAATCTAAATCCGTAACAGATGAGAACAAATCAAAACCAACCACTGCAATAGCATCTAAGGATGAGGAAAAAGTTTCTTTGTCTCTTCCCGAGAATAGTTCAGTGGTCGTTTCCGATGACGCAAATCAAAAGCATCGACCATCTGAAGGGGAGAGCAGTCTGAAAACAGATTTGTCAGAGTTGATTCCAAGAAAAAGATCCAGCCGTCGGAAATCTTATACAACTTCATTAATGGAAAAATCTAAGATTCTCAAGGAAAATGGTGAAGTTAGAGGGCAGGATAACTTACCAAATATAGATGATGAATGTAATCATCTAGAAGTTTCTGAATACATAGACGATATATATCAGTACTATTGGGTTACCGAGGCACATAGTCAAGCTCTATCAAATTACATGTCAATTCAGACAGAGATTACTCCTCATATGCGGGGAGTATTGGTCAACTGGCTAATTGAGGTACACTTCAAATATGATTTGATGCCCGAGACCCTATATCTGACAGTGACATTGTTGGATCAATATCTTTCCCAAGTGAACATAAAAACAAGTGATATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCGAAGTATGAGGATTTTTGGCATCCAAGGGTAAAAGATTTGATTAGCATCTCAGCCGAGGCGTATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATTCTTAGAAAATTGAAGTTCCGTCTTAATGCTCCCACTCCTTACGTTTTTATGGTTAGGTTTCTCAAGGCTGCACAATCAGATAAGAAGCTTGAACACCTGTCATTCTTTCTCATTGACCTATGCTTAGTTGAATATGAAGCTTTAGCGTTCAAGCCTTCATTACTATGTGCATCAGCTCTCTATGTTGCACGTTGTACCCTGAAAGTAACCCCAACATGGACACCACTACTTCACAAGCATGCGCGCTACGAAGTTTCACAGATCAGGGATTGTGCGGATATGATATTGAGATTCCATAAAGCTGCTGGGAAGGGGAAGTTAAAGGTCGCTTACGAAAAATATTCCAGAAAGGAACTCAGTGGGGTCGCAGCAGTGAAGCCGTTGGATAGACTTCCCCATTGA 2133 0.413 MVTLKGKSRLGSTRSSVGGLSRPTVGGKNFKVFSENDRIKVDDGTMTSAREVGAVSRKSAIEANKGVISNGVNKSKGDFKSMEKSKGTYGSSANMKARKALADVTNAQGNSTAAAKRNISKIKVSAGSTTKTVGISLRKSCTVREQRNSGRGGVPLDAPNGGLRVSLGDQKNSSNSNGGQSVAIKDRIARRKPMLPTTTSTSRKSLPVPLGTGLRVSLGDQKNSSNGRQSVAIKDRFARKPMLPTTTSISRKSLPVPRRVNGVDMNNTKENAGSSERANDQSGLPSKLTTGRRVSSQLTRSRLLKTRVSDGFIQMVTSNAYQASSRKSTKPIVKTTLKASTSQRILKSKSVTDENKSKPTTAIASKDEEKVSLSLPENSSVVVSDDANQKHRPSEGESSLKTDLSELIPRKRSSRRKSYTTSLMEKSKILKENGEVRGQDNLPNIDDECNHLEVSEYIDDIYQYYWVTEAHSQALSNYMSIQTEITPHMRGVLVNWLIEVHFKYDLMPETLYLTVTLLDQYLSQVNIKTSDMQLVGLTALLLASKYEDFWHPRVKDLISISAEAYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFLKAAQSDKKLEHLSFFLIDLCLVEYEALAFKPSLLCASALYVARCTLKVTPTWTPLLHKHARYEVSQIRDCADMILRFHKAAGKGKLKVAYEKYSRKELSGVAAVKPLDRLPH 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01753 710 Pfam Cyclin, C-terminal domain 588 702 IPR004367 -
Trre16g01753 710 MobiDBLite consensus disorder prediction 1 29 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 349 373 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 217 231 - -
Trre16g01753 710 Gene3D - 474 580 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 216 235 - -
Trre16g01753 710 CDD CYCLIN_CCNB1-like_rpt1 454 583 - -
Trre16g01753 710 Gene3D - 581 708 - -
Trre16g01753 710 SUPERFAMILY Cyclin-like 588 707 IPR036915 -
Trre16g01753 710 CDD CYCLIN_AtCycB-like_rpt2 588 704 - -
Trre16g01753 710 Pfam Cyclin, N-terminal domain 460 586 IPR006671 -
Trre16g01753 710 SUPERFAMILY Cyclin-like 450 586 IPR036915 -
Trre16g01753 710 SMART cyclin_7 495 579 IPR013763 -
Trre16g01753 710 SMART cyclin_7 592 674 IPR013763 -
Trre16g01753 710 MobiDBLite consensus disorder prediction 388 422 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 71 91 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 166 182 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01753 710 FunFam putative cyclin-B3-1 isoform X3 584 709 - -
Trre16g01753 710 PANTHER CYCLINS 406 692 IPR039361 -
Trre16g01753 710 MobiDBLite consensus disorder prediction 347 422 - -
Trre16g01753 710 FunFam Cyclin N-terminal domain containing 2 475 583 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 264 302 - -
Trre16g01753 710 MobiDBLite consensus disorder prediction 244 302 - -
Trre16g01753 710 SMART Cyclin_C_2 588 705 IPR004367 -
Trre16g01753 710 MobiDBLite consensus disorder prediction 144 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01753 Trre-Chr16 13965674 13974293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01753 243 709 Core Cell Cycle Gene Families AT1G16330 52.632 7.04e-159 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01753 K21777 - tpra:123899654 931.013