Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01747 ATGATGAACTCTCATGATAGATCATCCATGTGTGTTCAAGGTGATTCAGGCCTTGTCCTCACCACCGATCCAAAACCACGGCTTCGATGGACAGTCGAACTCCATGAACGTTTCGTCGATGCTGTTGCTCAACTTGGAGGCCCTGATAAAGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCTATTAAGGATGTTTCGGCTTTTGAACTGCAACGAAATACTGGCAACACTTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTACACAGAAGATTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAATACATGCAAAATATATTGGAGAAAGCATATCACACACTTGCAGGAGAGAACATGGCAGCTGCAGCTACAAATTTCAAGGGTGTTGGAACTCAAGGAATCCCTAACATGAAAGATTTTGTTTCTCCTCTAAATAATTTTCCTCATTTTCAAGACCTTAACATTTGTGGTAGTGATGATCATGATGAACAACTTGAGAGGCCAACCATTGATGGATTTATTACTAATGAAATTTTGTTTGTTGATCAAAAGAAAATTAGGACTAATAACCCTTTTAATGGAAGTGGAAAAGGTCCATTAATTTGGAATGATAATAATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAGGTGATGACTCATTGGATAGAAGTGATGATATTGAAAGTGATCCTATTAATGTTGAGATTTATGATACAAAGTTGAGTGAAAAGAATTTTGATGCATCTATCAAGCTTGGAATAACAACACCTATGATCAATGCTGTGGCAGCTGGTAGAAGCTCATCACCATTTGGTTGA 993 0.3867 MMNSHDRSSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDVSAFELQRNTGNTSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQNILEKAYHTLAGENMAAAATNFKGVGTQGIPNMKDFVSPLNNFPHFQDLNICGSDDHDEQLERPTIDGFITNEILFVDQKKIRTNNPFNGSGKGPLIWNDNNNDLRLHDLGTTSSCISPQDVPNFKGDDSLDRSDDIESDPINVEIYDTKLSEKNFDASIKLGITTPMINAVAAGRSSSPFG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01747 330 Gene3D - 24 82 - -
Trre16g01747 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 82 IPR017930 -
Trre16g01747 330 MobiDBLite consensus disorder prediction 266 285 - -
Trre16g01747 330 FunFam Myb family transcription factor 24 82 - -
Trre16g01747 330 Pfam Myb-like DNA-binding domain 28 76 IPR001005 -
Trre16g01747 330 Pfam MYB-CC type transfactor, LHEQLE motif 118 156 IPR025756 -
Trre16g01747 330 NCBIfam myb-like DNA-binding domain, SHAQKYF class 25 80 IPR006447 GO:0003677
Trre16g01747 330 SUPERFAMILY Homeodomain-like 24 80 IPR009057 -
Trre16g01747 330 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 173 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01747 Trre-Chr16 13936646 13939266 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01747 1 253 G2-like Transcription Factor Family AT1G79430 58.974 2.89e-96 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre16g01747 Myb_DNA-binding 4.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01747 - - gmx:100796268 395.586