Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01746 ATGGAAAGAATGTTCCCTGCAAAAAAGCCCTCAACTATGATGAACTCTCATGATAGATCATCCATGTGTGTTCAAGGTGATTCAGGCCTTGTCCTCACCACCGATCCAAAACCACGGCTTCGATGGACAGTCGAACTCCATGAACGTTTCGTCGATGCTGTTGCTCAACTTGGAGGCCCTGATAAAGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCTATTAAGGATGGTATGAGAGTTTCGGCTTTTGAACTGCAACGAAATACTGGCAACACTTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTACACAGAAGATTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAATACATGCAAAATATATTGGAGAAAGCATATCACACACTTGCAGGAGAGAACATGGCAGCTGCAGCTACAAATTTCAAGGGTGTTGGAACTCAAGGAATCCCTAACATGAAAGATTTTGTTTCTCCTCTAAATAATTTTCCTCATTTTCAAGACCTTAACATTTGTGGTAGTGATGATCATGATGAACAACTTGAGAGGCCAACCATTGATGGATTTATTACTAATGAAATTTTGTTTGTTGATCAAAAGAAAATTAGGACTAATAACCCTTTTAATGGAAGTGGAAAAGGTCCATTAATTTGGAATGATAATAATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAGGTGATGACTCATTGGATAGAAGTGATGATATTGAAAGTGATCCTATTAATGTTGAGATTTATGATACAAAGTTGAGTGAAAAGAATTTTGATGCATCTATCAAGCTTGGAATAACAACACCTATGATCAATGCTGTGGCAGCTGGTAGAAGCTCATCACCATTTGGTTGA 1038 0.3882 MERMFPAKKPSTMMNSHDRSSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDGMRVSAFELQRNTGNTSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQNILEKAYHTLAGENMAAAATNFKGVGTQGIPNMKDFVSPLNNFPHFQDLNICGSDDHDEQLERPTIDGFITNEILFVDQKKIRTNNPFNGSGKGPLIWNDNNNDLRLHDLGTTSSCISPQDVPNFKGDDSLDRSDDIESDPINVEIYDTKLSEKNFDASIKLGITTPMINAVAAGRSSSPFG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01746 345 Gene3D - 36 94 - -
Trre16g01746 345 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01746 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Trre16g01746 345 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Trre16g01746 345 FunFam Myb family transcription factor 36 94 - -
Trre16g01746 345 Pfam Myb-like DNA-binding domain 40 88 IPR001005 -
Trre16g01746 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 187 IPR044848 GO:0003700
Trre16g01746 345 Pfam MYB-CC type transfactor, LHEQLE motif 133 171 IPR025756 -
Trre16g01746 345 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677
Trre16g01746 345 MobiDBLite consensus disorder prediction 281 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01746 Trre-Chr16 13936646 13939302 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01746 4 268 G2-like Transcription Factor Family AT1G79430 60.284 2.85e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre16g01746 Myb_DNA-binding 4.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01746 - - gmx:100796268 424.861