Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01745 ATGGAAAGAATGTTCCCTGCAAAAAAGCCCTCAACTATGATGAACTCTCATGATAGATCATCCATGTGTGTTCAAGGTGATTCAGGCCTTGTCCTCACCACCGATCCAAAACCACGGCTTCGATGGACAGTCGAACTCCATGAACGTTTCGTCGATGCTGTTGCTCAACTTGGAGGCCCTGATAAAGCTACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCCCACAAGGAATTCAATGAACAATCTATTAAGGATGTTTCGGCTTTTGAACTGCAACGAAATACTGGCAACACTTCTTCTATGACTGGCCGCAACATGAATGAGATGCAAATGGAGGTACACAGAAGATTGCATGAACAACTAGAGGTTCAAAAGCACCTTCAATTGAGGATTGAGGCTCAAGGAAAATACATGCAAAATATATTGGAGAAAGCATATCACACACTTGCAGGAGAGAACATGGCAGCTGCAGCTACAAATTTCAAGGGTGTTGGAACTCAAGGAATCCCTAACATGAAAGATTTTGTTTCTCCTCTAAATAATTTTCCTCATTTTCAAGACCTTAACATTTGTGGTAGTGATGATCATGATGAACAACTTGAGAGGCCAACCATTGATGGATTTATTACTAATGAAATTTTGTTTGTTGATCAAAAGAAAATTAGGACTAATAACCCTTTTAATGGAAGTGGAAAAGGTCCATTAATTTGGAATGATAATAATAATGATCTTAGGCTTCATGATTTGGGAACAACTTCATCATGCATTAGTCCTCAAGATGTTCCTAATTTCAAAGGTGATGACTCATTGGATAGAAGTGATGATATTGAAAGTGATCCTATTAATGTTGAGATTTATGATACAAAGTTGAGTGAAAAGAATTTTGATGCATCTATCAAGCTTGGAATAACAACACCTATGATCAATGCTGTGGCAGCTGGTAGAAGCTCATCACCATTTGGTTGA 1029 0.3878 MERMFPAKKPSTMMNSHDRSSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEQSIKDVSAFELQRNTGNTSSMTGRNMNEMQMEVHRRLHEQLEVQKHLQLRIEAQGKYMQNILEKAYHTLAGENMAAAATNFKGVGTQGIPNMKDFVSPLNNFPHFQDLNICGSDDHDEQLERPTIDGFITNEILFVDQKKIRTNNPFNGSGKGPLIWNDNNNDLRLHDLGTTSSCISPQDVPNFKGDDSLDRSDDIESDPINVEIYDTKLSEKNFDASIKLGITTPMINAVAAGRSSSPFG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01745 342 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g01745 342 Pfam MYB-CC type transfactor, LHEQLE motif 130 168 IPR025756 -
Trre16g01745 342 MobiDBLite consensus disorder prediction 278 297 - -
Trre16g01745 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Trre16g01745 342 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 184 IPR044848 GO:0003700
Trre16g01745 342 FunFam Myb family transcription factor 36 94 - -
Trre16g01745 342 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677
Trre16g01745 342 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Trre16g01745 342 Pfam Myb-like DNA-binding domain 40 88 IPR001005 -
Trre16g01745 342 Gene3D - 36 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01745 Trre-Chr16 13936646 13939302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01745 4 265 G2-like Transcription Factor Family AT1G79430 59.574 6.78e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre16g01745 Myb_DNA-binding 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01745 - - gmx:100796268 413.305