Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01730 ATGGGTCGTCGCAAAATTGAGATTGTGAGAGTGAAAGACCCTGCTATGAGGCAAGTTACATTCTCTAAGCGTCGAATGAGGTTATTTAATAAAGCAAATGAAATTGCAGTCTTAACTGGGGCTGAAATTGCTATTATTGTATTCTCCCCTGGAAATAAGCCTTACTCTTTTGGCCACCCAAGTGTGGATGCTATTGCATCCAATTTTCTCGAAGAAAAGCTGAATCCAAATTATGTTTTAGGAACCATCTCTTCTAATATAGAGGATCTCAATCAACAACTTCAAGAAGTGTTGGCAGAATTAGATGAGGCTGAAAAGGAAGCTAGGTCCATGGTGAGATTCTTATAG 348 0.3908 MGRRKIEIVRVKDPAMRQVTFSKRRMRLFNKANEIAVLTGAEIAIIVFSPGNKPYSFGHPSVDAIASNFLEEKLNPNYVLGTISSNIEDLNQQLQEVLAELDEAEKEARSMVRFL 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01730 115 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Trre16g01730 115 Coils Coil 80 114 - -
Trre16g01730 115 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trre16g01730 115 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g01730 115 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g01730 115 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01730 115 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g01730 115 PANTHER MADS BOX PROTEIN 3 104 - -
Trre16g01730 115 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Trre16g01730 115 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre16g01730 115 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01730 Trre-Chr16 13843600 13843947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01730 1 111 Type I MADS-box Gene Family AT2G24840 44.348 4.72e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g01730 SRF-TF 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01730 - - psat:127135568 140.969