Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01729 ATGGGTCGTCGCAAAATTGAGATTGTGAGAGTGAAAGACCCTGCTATGAGGCAAGTTACATTCTCTAAGCGTCGAATGAGGTTATTTAATAAAGCAAATGAAATTGCAGTCTTAACTGGGGCTGAAATTGCTATTATTGTATTCTCCCCTGGAAATAAGCCTTACTCTTTTGGCCACCCAAGTGTGGATGCTATTGCATCCAATTTTCTCGAAGAAAAGCTGAATCCAAATTATGTTTTAGGAACCATCTCTTCTAATATAGAGGATCTCAATCAACAACTTCAAGAAGTGTTGGCAGAATTAGATGAGGCTGAAAAGGAAGCTAGGGAACCAGTCATTGGAATTAAAAACCAATCCACAGAAGGAAAATAA 372 0.3844 MGRRKIEIVRVKDPAMRQVTFSKRRMRLFNKANEIAVLTGAEIAIIVFSPGNKPYSFGHPSVDAIASNFLEEKLNPNYVLGTISSNIEDLNQQLQEVLAELDEAEKEAREPVIGIKNQSTEGK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01729 123 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre16g01729 123 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre16g01729 123 Coils Coil 80 107 - -
Trre16g01729 123 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g01729 123 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g01729 123 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g01729 123 PANTHER MADS BOX PROTEIN 3 105 - -
Trre16g01729 123 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g01729 123 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Trre16g01729 123 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Trre16g01729 123 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01729 Trre-Chr16 13843600 13844120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01729 1 109 Type I MADS-box Gene Family AT2G24840 44.248 1.17e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g01729 SRF-TF 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01729 - - psat:127135568 140.969