Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01724 ATGCAGATGAGTAACAATAGTGTATCAGAAGAAGCTCACAAAATAGAACAAAGTTGTGCAAATGGAACTACAGAAAATGAAGATATTAGAAATGTGAATAACCAAGAAATAAAATATGGTTTCACAAATGAAAACAATACAAATAAACCAACAACATCACCATCATTTTCATCATCTAAGCCTCAAAAGTTAGAATCACACATGAGGAATATCTCAGAATTTTCAACTATTCCTAGAGCAAGATCAAGTCCAAGAATGATTTCAAAGAGCGGATCGAATTCACGTAGTGATAGTTTAGAAAGCACAAGTACACCAATATATAAGCCACATACAGGAGGTGATGTGAGATGGGATGCAATCAACTTGGTTTCAAGAGAGTCACATTGTAATCTCAACTTTGGTCATTTTCGGCTTTTGAAGCGTGTCGGTTATGGTGACATCGGAAGTGTTTATCTTGTTGAACTTAAAGGGACAGGAACATTTTATGCCATGAAAGTAATGGATAAGGCTTCACTTGCTAGTAGAAACAAGCTTCTTAGAGCACAAACTGAAAGAGAGATTCTTGGACTTCTTGATCACCCTTTCTTGCCAACTTTGTATTCTCATTTTGAAAATGAAAAGTATTATTGTTTGGTTATGGAGTTTTGTAGTTGTGGTAGTTTGCATAATCTCAGAATGAAGCAACCAAACAAGCATTTCACTGAAAATGCTGCAAGGTTTTATTGTTCAGAGATTCTATTAGCATTGGAGTACCTCCACATGTTAGGAATAGTATACAGAGACTTAAAACCAGAAAATGTTCTAGTCCGTGACGAAGGTCACATAATGCTATCAGATTTCGACTTATCCCTTCGATGTTCGGTTAGCCCTACACTCGTCAAGTCCACCTCCGTACACATAACCACCACCACGACATCCATCGGAATCCTTGATGACGATCATGCCGTACAAGGTTGTATGCAACCATCAAGTTACTTCTTTCCAAGAATCCTCCCATCTAAAAAAAACCGAAAATCAAAATCAGATTTCGGACTCATCCGTCTTCCAGAATTAATGGCAGAACCAACAAACGTCCGATCAATGTCGTTCGTTGGAACACACGAATATCTTGCACCTGAAATCGTCCGTGGTGAAGGACACGGAAGTGCAGTTGATTGGTGGACGTTTGGGATATTTTTATACGAGCTTTTAACCGGAACAACACCGTTTAAAGGTAACGGAAACCGCGCTACGCTTTTCAATGTTGTAGGACAACCTTTAAGGTTTCCTGACCATCCTTCATGTAGTCCTGTTGCTAGAGATCTTATTAGAGGATTGTTGGTTAAAGAACCTCAAAAAAGATTTGCTTATAAAAGAGGTGCTACCGAGATTAAACAACATCCGTTTTTCGAAGGGGTTAATTGGGCTTTGATTCGAAGTGCTACTCCTCCTATTATACCAGAACCATTTGATTTTAGTCAGTATGTTAGTAAGGAAACTATTGCTGATAAGAAGATTGTTGATATTGTGAGTGATAAAAATAATAGTAAGGTGAAACATGATTCTTCTTATGAAGATTTTGAGTATTTTTAG 1572 0.376 MQMSNNSVSEEAHKIEQSCANGTTENEDIRNVNNQEIKYGFTNENNTNKPTTSPSFSSSKPQKLESHMRNISEFSTIPRARSSPRMISKSGSNSRSDSLESTSTPIYKPHTGGDVRWDAINLVSRESHCNLNFGHFRLLKRVGYGDIGSVYLVELKGTGTFYAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSHFENEKYYCLVMEFCSCGSLHNLRMKQPNKHFTENAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVSPTLVKSTSVHITTTTTSIGILDDDHAVQGCMQPSSYFFPRILPSKKNRKSKSDFGLIRLPELMAEPTNVRSMSFVGTHEYLAPEIVRGEGHGSAVDWWTFGIFLYELLTGTTPFKGNGNRATLFNVVGQPLRFPDHPSCSPVARDLIRGLLVKEPQKRFAYKRGATEIKQHPFFEGVNWALIRSATPPIIPEPFDFSQYVSKETIADKKIVDIVSDKNNSKVKHDSSYEDFEYF 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01724 523 ProSiteProfiles AGC-kinase C-terminal domain profile. 464 523 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre16g01724 523 SUPERFAMILY Protein kinase-like (PK-like) 133 491 IPR011009 -
Trre16g01724 523 FunFam Serine/threonine-protein kinase D6PK-like 134 219 - -
Trre16g01724 523 ProSiteProfiles Protein kinase domain profile. 136 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01724 523 CDD STKc_phototropin_like 135 482 - -
Trre16g01724 523 Pfam Protein kinase domain 341 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01724 523 Pfam Protein kinase domain 137 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01724 523 FunFam serine/threonine-protein kinase D6PK-like 220 287 - -
Trre16g01724 523 Gene3D Transferase(Phosphotransferase) domain 1 341 481 - -
Trre16g01724 523 Gene3D Transferase(Phosphotransferase) domain 1 220 291 - -
Trre16g01724 523 SMART serkin_6 136 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g01724 523 Gene3D Phosphorylase Kinase; domain 1 135 219 - -
Trre16g01724 523 MobiDBLite consensus disorder prediction 1 107 - -
Trre16g01724 523 PANTHER FLIPPASE KINASE 1-RELATED 38 488 - -
Trre16g01724 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Trre16g01724 523 FunFam Serine/threonine-protein kinase AGC1-7 356 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01724 Trre-Chr16 13790133 13792420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01724 99 523 AGC Kinase Gene Family AT1G79250 71.397 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre16g01724 Pkinase 2.7e-37 CL0016