Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01723 ATGGAAAATCGAATCTACACTTCATATAGCCCAACCAACTACACAGCACCATCAACAACAATATCTCCGACCCGTTTTTACGACCCGAATACAATGTTCCTCGCTCATTATCGCCGCACCGCCGAAGCTGCCGCCGCTGCTTCCGCTATCCGTTACTCTTCTTCTCTTTCTGATATCGACATTTGTCCTCCTGGTGTTTCTTCTAGAATCTCCTCCTCTTCTTCTACTGCTAATTTATTGTCTCAAACTAATCCTTGGGCTAACGCTTTCAACAACACCACCGCTGCTACTGTTGCCTCTGCTTCACTTGAACTTAAACGCTCTTCTGACGCGCTCTACCATCCAACCATTTTGAATACAATCGGGCAAAACGAAGCTTGGTATACTACAAACTCATTGGCCAAGCGCCCTAGATATGAAACCGGAAGCACTTTGCCTATTTATCCACAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTTGGAGAGAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAGGGTGGAATTCCAGATTGGAAAGAGGTTCCAAATGTTGTTCCAAGTGAAACTCTTCCTGAGAGACCTGGAGAACCAGATTGTCCATTTTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAGGTGCAAATTTAATCATCCAAATGTACCCTCAGAAAATCCTGACGTTTCTGGCTTACCCGAGAGGCCACAAGAGCCCCCTTGTGCGTTTTACTTGAAAACTGGAAAATGTAAATATGGTGCTGCGTGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTCTCTGATGAATCGAGCCGTACCGTTGAGCAGACACAAACAAATTCTTCTATGTTTGACGGGGCAATAGGAGATACACAACAAACTAAGCCTCTTATATCTCCACTGTTGCATAATAGCAAAGGGCTTCCTGTGAGACTGGGGGAAGTGGATTGTCCGTTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCACTTGCCGCTACAATCATCCTGACATGAATGCAATTAATCCACCAATTTCTGCATTGGCCCCTTCTCTTTTGGGATCCTCGGCTGCTAATCATAACATTGGAGTTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGACCCCAGGATCTCAAATCCAATGACCCAGGTGGGAGTAACAGGGACTATCTATCCTCAGCGTCCTGGACAGATTGAATGTGATTACTATATGAAATCTGGCATATGTAAGTTTGCCGAAAGATGCAAGTATCATCACCCAATCGACCGCTCAACAGCATCACAGTCAAAACTACAATCAAATGTTAAACTTACTGCTGCAGGGTTGCCCAGAAGAGAGGGTACTGAGATTTGCCCATATTATTTGAAAACTGCCACTTGCAAGTTTGGCGCAACATGCAAGTTTGATCATCCACCACCAGGAGAAGTGATGGAGATGGCCAAGACGCAAGGAACTTCTACAGCCAATGGAGGAGAAACAGAGACCAACGCAGATGTGTCTGGTTCTGCTCCGGAACAATAG 1563 0.4466 MENRIYTSYSPTNYTAPSTTISPTRFYDPNTMFLAHYRRTAEAAAAASAIRYSSSLSDIDICPPGVSSRISSSSSTANLLSQTNPWANAFNNTTAATVASASLELKRSSDALYHPTILNTIGQNEAWYTTNSLAKRPRYETGSTLPIYPQRPGEKDCAHYMLTRTCKFGESCKFDHPIWVPEGGIPDWKEVPNVVPSETLPERPGEPDCPFFLKTQKCKFGSRCKFNHPNVPSENPDVSGLPERPQEPPCAFYLKTGKCKYGAACKFHHPKDIQIQFSDESSRTVEQTQTNSSMFDGAIGDTQQTKPLISPLLHNSKGLPVRLGEVDCPFYMKTGSCKFGATCRYNHPDMNAINPPISALAPSLLGSSAANHNIGVINPAASFYQAFDPRISNPMTQVGVTGTIYPQRPGQIECDYYMKSGICKFAERCKYHHPIDRSTASQSKLQSNVKLTAAGLPRREGTEICPYYLKTATCKFGATCKFDHPPPGEVMEMAKTQGTSTANGGETETNADVSGSAPEQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01723 520 ProSiteProfiles Zinc finger C3H1-type profile. 459 487 IPR000571 GO:0046872
Trre16g01723 520 Gene3D - 450 506 - -
Trre16g01723 520 FunFam Zinc finger CCCH domain-containing protein 37 110 188 - -
Trre16g01723 520 SUPERFAMILY CCCH zinc finger 461 486 IPR036855 GO:0046872
Trre16g01723 520 Gene3D - 190 239 - -
Trre16g01723 520 Gene3D - 111 189 - -
Trre16g01723 520 Gene3D - 371 447 - -
Trre16g01723 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 177 IPR000571 GO:0046872
Trre16g01723 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 271 IPR000571 GO:0046872
Trre16g01723 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 325 348 IPR000571 GO:0046872
Trre16g01723 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 229 IPR000571 GO:0046872
Trre16g01723 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 461 486 IPR000571 GO:0046872
Trre16g01723 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 411 434 IPR000571 GO:0046872
Trre16g01723 520 ProSiteProfiles Zinc finger C3H1-type profile. 322 350 IPR000571 GO:0046872
Trre16g01723 520 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
Trre16g01723 520 SMART c3hfinal6 322 349 IPR000571 GO:0046872
Trre16g01723 520 SMART c3hfinal6 203 230 IPR000571 GO:0046872
Trre16g01723 520 SMART c3hfinal6 244 271 IPR000571 GO:0046872
Trre16g01723 520 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Trre16g01723 520 SMART c3hfinal6 408 435 IPR000571 GO:0046872
Trre16g01723 520 SMART c3hfinal6 459 486 IPR000571 GO:0046872
Trre16g01723 520 ProSiteProfiles Zinc finger C3H1-type profile. 203 231 IPR000571 GO:0046872
Trre16g01723 520 Gene3D - 240 359 - -
Trre16g01723 520 ProSiteProfiles Zinc finger C3H1-type profile. 244 272 IPR000571 GO:0046872
Trre16g01723 520 MobiDBLite consensus disorder prediction 494 520 - -
Trre16g01723 520 SUPERFAMILY CCCH zinc finger 152 178 IPR036855 GO:0046872
Trre16g01723 520 FunFam zinc finger CCCH domain-containing protein 37 406 500 - -
Trre16g01723 520 ProSiteProfiles Zinc finger C3H1-type profile. 408 436 IPR000571 GO:0046872
Trre16g01723 520 SUPERFAMILY CCCH zinc finger 208 229 IPR036855 GO:0046872
Trre16g01723 520 SUPERFAMILY CCCH zinc finger 410 436 IPR036855 GO:0046872
Trre16g01723 520 PANTHER PROTEIN PHOSPHATASE RELATED 311 367 - -
Trre16g01723 520 SUPERFAMILY CCCH zinc finger 246 272 IPR036855 GO:0046872
Trre16g01723 520 SUPERFAMILY CCCH zinc finger 326 349 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01723 Trre-Chr16 13780370 13786341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01723 319 488 C2H2 Transcription Factor Family AT5G18550 32.749 1.34e-22 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g01723 zf-CCCH 8e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01723 - - pvu:PHAVU_011G180700g 728.398