Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g01721 ATGCAGCGGACAGAGGCACCCAGAACGGATGCTCTGGTCGCAATATACCATCAACAAGAATCCAACTTTGGATTGCCCTGGAAAATTCTATGCCTTGTTATTAATGTTCAGTTAAAGGTGGTTGGTAACACAGATAAGTTTTTGGCTCTGGTAACATTAATTCCATTGCAGCAACAAGAGCTTATGGTAGAGGACAATCATCCACCACATGATGATAGTCCTAATGAAGTCTATTCTTTTTCAAAGATGTTGACTTCAACAGAAGCAAGTACACATGCTGCTGGAATTTATATTCCAAAGGAACATGCAGAAAGATGCTTCCCCCCACTGGATATGACTGTTCAACCACCAATGCAAGATCTAGTGGTGAAGGACTTGCATGGAATTGAGTGGAATTTTCGACACATTTACTGTGATCATCAGAGAGCTCATTTCCTTACAAGTGGTTGGAGCACGTTCGTAAATTCTAAAAAACTTGTTCCTGGAGATTCATGCATTTTCGCCAGAGGAGAGAATGGTGAAATTGGTATTGGGATTCGTCGAGCAATGAAACAACATAGTGATATATTGAAAACATCATCTCCACTTGGAGCAATGTGTGTTGCTTCTCATGCTGTCTCTACAGGAACTATGTTCCTTGTCCAGTACTACCCTTGGATTGCTCCCTTTGAGTTTATGATCCCTCTGAAAATTTATGTTGAGTCCATTGAAAGAGACTACTTCATTGGAATGAGAGTTCGCAATTTGTACGAAGTTGAAGGATCTGCAAAAAGATATGGTACAATTGTTGGTAGTGAAGATATTGATCCCATTAGGTGGCCTGGATCTGAATGGAGATGTATCAAGGTGCAATGGGATTCAATACCACCAAATACTTCTACACAACTTGAAAGGGTTTGTCCTTGGTGGATTGAGCCTTTAGGATCTTCCAAGATTAAGGGCTTTCCTAAGGATATTGGGAGTTCAACCAATGCTGAGTATCACACAGTGGATATGGAAGTGCAAGGCCAACAGCATTACAATACTAGAAATGTTGAAAATTCATTTTTCTTCATTTTTGCTTTCTTTATATTACTTTGCTTTTTTATATTTGTGATTTTTGTTTTTCATCCTCTTCTGTAA 1122 0.3922 MQRTEAPRTDALVAIYHQQESNFGLPWKILCLVINVQLKVVGNTDKFLALVTLIPLQQQELMVEDNHPPHDDSPNEVYSFSKMLTSTEASTHAAGIYIPKEHAERCFPPLDMTVQPPMQDLVVKDLHGIEWNFRHIYCDHQRAHFLTSGWSTFVNSKKLVPGDSCIFARGENGEIGIGIRRAMKQHSDILKTSSPLGAMCVASHAVSTGTMFLVQYYPWIAPFEFMIPLKIYVESIERDYFIGMRVRNLYEVEGSAKRYGTIVGSEDIDPIRWPGSEWRCIKVQWDSIPPNTSTQLERVCPWWIEPLGSSKIKGFPKDIGSSTNAEYHTVDMEVQGQQHYNTRNVENSFFFIFAFFILLCFFIFVIFVFHPLL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g01721 373 Gene3D - 77 183 IPR015300 -
Trre16g01721 373 FunFam Auxin response factor 239 311 - -
Trre16g01721 373 SUPERFAMILY DNA-binding pseudobarrel domain 73 188 IPR015300 -
Trre16g01721 373 CDD B3_DNA 79 181 IPR003340 GO:0003677
Trre16g01721 373 ProSiteProfiles B3 DNA-binding domain profile. 81 183 IPR003340 GO:0003677
Trre16g01721 373 Gene3D - 240 312 - -
Trre16g01721 373 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 322 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre16g01721 373 SMART B3_2 80 183 IPR003340 GO:0003677
Trre16g01721 373 Pfam Auxin response factor 202 282 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre16g01721 373 Pfam B3 DNA binding domain 89 182 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g01721 Trre-Chr16 13758945 13764166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g01721 17 306 B3 DNA Binding Superfamily AT5G62000 46.844 3.52e-85 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre16g01721 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g01721 - - tpra:123888364 521.546